| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,370,029 – 13,370,090 |
| Length | 61 |
| Max. P | 0.615787 |
| Location | 13,370,029 – 13,370,090 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 71.01 |
| Shannon entropy | 0.52472 |
| G+C content | 0.40676 |
| Mean single sequence MFE | -13.18 |
| Consensus MFE | -6.34 |
| Energy contribution | -7.14 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13370029 61 - 21146708 UACAGUGAUUUUCUGUUGCAGGUGCAUUGAGACCGAUCUGCAUUCUGGAAACUGCAAACAU- ....((..(((((...(((((((............)))))))....)))))..))......- ( -12.60, z-score = -0.02, R) >droSim1.chr2R 12111078 61 - 19596830 UACAGUGAUUUUCUGUUGCAGGAACAUUGAGACCGAUCUGCAUUCUGAAAACUACAAACCU- ....(((.(((((...(((((....((((....)))))))))....))))).)))......- ( -11.80, z-score = -1.46, R) >droSec1.super_1 10867877 61 - 14215200 UACAGUGAUUUUCUGUUGCAGGUACAUUGAGACCGAUCUGCAUUCUGAAGACUACAAACCU- ....(((.(((((...(((((((............)))))))....))))).)))......- ( -13.10, z-score = -1.22, R) >droYak2.chr2R 3044568 60 + 21139217 AACAGUGUACUUCC-UUGCAGAUGCCUUGAAACCGAUCUGUUUUCUGGAUACUGCCAAGUU- ..((((((.((...-..((((((............)))))).....)))))))).......- ( -12.10, z-score = -1.08, R) >droAna3.scaffold_13266 15144134 62 - 19884421 UACAAUGAUUAUGAAUUGUAUUUUCAGUUGACCCGAUCUGCUUGUUGGUCAACCGAAAGUCU ((((((........))))))(((((.(((((((.(((......)))))))))).)))))... ( -16.30, z-score = -3.00, R) >consensus UACAGUGAUUUUCUGUUGCAGGUACAUUGAGACCGAUCUGCAUUCUGGAAACUACAAACCU_ ....(((.(((((...(((((((............)))))))....))))).)))....... ( -6.34 = -7.14 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:56 2011