| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,357,362 – 13,357,456 |
| Length | 94 |
| Max. P | 0.716222 |
| Location | 13,357,362 – 13,357,456 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 64.62 |
| Shannon entropy | 0.70265 |
| G+C content | 0.53661 |
| Mean single sequence MFE | -25.33 |
| Consensus MFE | -10.15 |
| Energy contribution | -10.08 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13357362 94 - 21146708 UUCCCCUGCAACUGCUGGGUGUCCAACUGGUGCCCUCCGC----------ACGCGUCCCGCG--ACCCAUGCUGCACUUUCACUUUUCAGUGGG-ACGCAGUUUUUC-- ...(((.((....)).))).....((((.((((.....))----------))(((((((((.--.........................)))))-))))))))....-- ( -29.97, z-score = -1.32, R) >droSim1.chr2R 12098545 94 - 19596830 UUCCACUGCAACUGCUGGGUGUCCAACUGGUGCCCUCCCC----------ACACGCCCCGCU--GCCCAUGCUGCACUUUCACUUUUCAGUGGG-ACGCAGUUUUUC-- .........((((((.(((((.((....))))))).....----------....(.((((((--(.....(.((......)))....)))))))-.)))))))....-- ( -25.40, z-score = -0.25, R) >droSec1.super_1 10854433 94 - 14215200 UUCCACUGCAACUGCUGGGUGUCCAACUGGUGCCCUCCCC----------ACACGUCCCGCG--ACCCAUGCUGCACUUUCACUUUUCAGUGGG-ACGCAGUUUUUC-- .........((((((.(((((.((....))))))).....----------....(((((((.--.........................)))))-))))))))....-- ( -27.47, z-score = -1.14, R) >droYak2.chr2R 3031783 93 + 21139217 UUCCACUACGACUGCUGGGUGUCCAACUGGUGCAC-CCGC----------ACGCGUCCCGCG--GCCCAUGCUGCACUUUCACUUUUUAGUGGG-ACGCAGUUUUUC-- .........((((((.((((((((....)).))))-))))----------..((((((((((--((....)))))......(((....))))))-))))))))....-- ( -39.30, z-score = -3.97, R) >droEre2.scaffold_4845 10091610 93 + 22589142 UUCCACUGCGACUGCUGGGAGUCCAACUGGUGCCC-CCGC----------ACGCGUCUCGCG--GCCCAUGCUGCACUUUCACUUUUCAGUGGG-ACGCAGUUUUUC-- ....((((((..(((.(((.((((....)).))))-).))----------)..)((((((((--((....)))))......(((....))))))-))))))).....-- ( -32.70, z-score = -1.29, R) >droAna3.scaffold_13266 8840305 106 - 19884421 UUCCACUUCACCUUCAGAAUGUCCAACUGGUGAUCCCCGCCACUCUGAAAUCCCUUCCUGCGCCACCCUCACUGCACUUUCACUUUUCAGUGGG-ACGCAGUUUUUC-- ............((((((..(.....)(((((.....))))).))))))........(((((.....(((((((.............)))))))-.)))))......-- ( -21.62, z-score = -1.44, R) >dp4.chr3 4811225 90 - 19779522 ---UUAAGCACCUUGUUUG-GUCUAGAUAUUGCACUGC------------CAAUCCGCAGUCUCUCCCCUGCUGCACUUUCACUUUUCAGUGGG-ACGCAGUUUUUC-- ---...((.(((......)-))))(((.((((((((((------------......)))))......((..(((.............)))..))-..))))).))).-- ( -20.62, z-score = -0.90, R) >droPer1.super_2 5005223 90 - 9036312 ---UUCAGCGCCUUGUUUG-GUCUAGAUAUUGCACUGC------------CAAUCUGCAGUCUCUCCCCUGCUGCACUUUCACUUUUCAGUGGG-ACGCAGUUUUUC-- ---......((..((((((-...))))))..))(((((------------.....((((((.........)))))).(..((((....))))..-).))))).....-- ( -20.10, z-score = -0.15, R) >droWil1.scaffold_181141 781055 88 + 5303230 --AUCCUCCACAAUCACCACAUCUCGCCCUUCGUU--------------UUUGUAUAUCGGU-CUUG-CUGUUGCACUUUCACUUUUCAAUGGGUAGGCAAUUUUC--- --.......................(((.......--------------..((((...(((.-....-))).)))).....((((......)))).))).......--- ( -9.70, z-score = 0.59, R) >droGri2.scaffold_15245 7551172 94 - 18325388 ------UUCAAGCACAGCUCAGCUUAGCUUUAGUUAAGUCU-------GUCCGUCUGUCUGU-UUCGCCUGCUGCACUUUCACUUUUCCGUGGG-ACGCAGUUGCUGCC ------.....(((((((.(((((((((....)))))).))-------)...).))))....-...((..(((((..(..(((......)))..-).))))).)).)). ( -26.40, z-score = -1.04, R) >consensus UUCCACUGCAACUGCUGGGUGUCCAACUGGUGCCCUCCGC__________ACGCGUCCCGCG__UCCCAUGCUGCACUUUCACUUUUCAGUGGG_ACGCAGUUUUUC__ ......................................................................(((((...((((((....))))))...)))))....... (-10.15 = -10.08 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:55 2011