| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,356,659 – 13,356,756 |
| Length | 97 |
| Max. P | 0.668562 |
| Location | 13,356,659 – 13,356,756 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 66.80 |
| Shannon entropy | 0.62038 |
| G+C content | 0.41045 |
| Mean single sequence MFE | -22.98 |
| Consensus MFE | -11.67 |
| Energy contribution | -11.32 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668562 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13356659 97 + 21146708 ------CGGUGGCUUAGGCAAAUAUACUGAAAUAGACCGAAGUAUAUCGAGGUGAUAUCGAUAUGCUGCACUCAUC--GAUAGGUGGGUCUCUUAUCAGCUAAAU- ------.....((....)).......((((((.((((((.((((((((((.......)))))))))).)...((((--....))))))))).)).))))......- ( -27.60, z-score = -1.88, R) >droSim1.chr2R 12097838 97 + 19596830 ------CGGUGGCUUAGGCAAAUAUACUGAAAUAGACCAAGGUAUAUCGAGGUGAUAUCGAUGUUCUGCAUUCAUC--GAUAGGCUGGUCUCUUAUCAGGUAUAU- ------.....((....))..(((((((((((.(((((..((....))..(((..((((((((.........))))--)))).)))))))).)).))).))))))- ( -23.10, z-score = -0.40, R) >droSec1.super_1 10853698 97 + 14215200 ------CGGUGGCUUAGGCAAAUAUACUGAAUUAGACCAAAGUAUAUCGAGGUGAUAUCGAUAUGCUGCACUCAUC--GAUAGGCCGGUCUCUUAUCAGGUAUAU- ------.....((....))..(((((((((...(((((..((((((((((.......))))))))))((.((....--...)))).)))))....))).))))))- ( -26.10, z-score = -1.19, R) >droYak2.chr2R 3031023 97 - 21139217 ------CGGUGGCUUAGGCGAAUAUACUGAAAUAGACAAAAGAAUACCGAGACUAUAUCGAUAGACUGCAAUUAUC--GAUAGGCGUGUUUCUUAUCAGCAUAGU- ------.((((((....))(..(((......)))..).......))))(((((..(((((((((.......)))))--)))).....))))).............- ( -16.30, z-score = 0.80, R) >droEre2.scaffold_4845 10090705 91 - 22589142 ------CGGUGGCUUAGGCAAAAAUACUGAAAUAGACAAAAGUAUACCGAGGUUAUAUCGAUAUGCUGCACUUAUC--GAUAGGCAUGUUUCUUAUCAG------- ------(((((((....)).....((((............)))))))))..(((.((((((((.........))))--)))))))..............------- ( -16.20, z-score = 0.17, R) >droAna3.scaffold_13266 8839503 105 + 19884421 CAGUUUUUGUUGUCUAUGAAAUAAUAGAAACAGAGGGCCAACCGCCCUGCCAACUUGUUCGC-UGUUAGAGUUGCCAGGGCAACAAAAUAUUCCAUUACCCAACAU ..(((((((((.(((((......)))))))))))(((......((((((.((((((......-.....)))))).)))))).......((......)))))))).. ( -28.60, z-score = -2.45, R) >consensus ______CGGUGGCUUAGGCAAAUAUACUGAAAUAGACCAAAGUAUACCGAGGUGAUAUCGAUAUGCUGCACUCAUC__GAUAGGCAGGUCUCUUAUCAGCUAAAU_ ...........((....)).......((((...(((((..((((((((((.......))))))))))((....((....))..)).)))))....))))....... (-11.67 = -11.32 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:54 2011