| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,347,420 – 13,347,486 |
| Length | 66 |
| Max. P | 0.878283 |
| Location | 13,347,420 – 13,347,486 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 79.84 |
| Shannon entropy | 0.35949 |
| G+C content | 0.41108 |
| Mean single sequence MFE | -17.38 |
| Consensus MFE | -11.85 |
| Energy contribution | -13.44 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.878283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13347420 66 - 21146708 CAUUUUCCAAGCUGAUUGCGCA---CUCGGCAUUCUUUUGCGCAAUUAGAGGGAAGUUGUGAGUUUAAA ((.(((((...(((((((((((---.............)))))))))))..))))).)).......... ( -21.32, z-score = -2.63, R) >droSim1.chr2R 12088688 66 - 19596830 CAUUUUCCAAGCUGAUUGCGCA---CUCGGCAUUCUUUUGCGCAAUUAGAGGGAAGUUGUGAGUUUAAA ((.(((((...(((((((((((---.............)))))))))))..))))).)).......... ( -21.32, z-score = -2.63, R) >droSec1.super_1 10844564 66 - 14215200 CAUUUUCCAAGCUGAUUGCGCA---CUCGGCAUUCUUUUGCGCAAUUAGAGGGAAGUUGUGAGUUUAAA ((.(((((...(((((((((((---.............)))))))))))..))))).)).......... ( -21.32, z-score = -2.63, R) >droYak2.chr2R 3021972 68 + 21139217 CAUUUUCCAAGCUGAUUGCGCA-CUCUCGGCAUUCUUUUGCGCAAUUAGAGGGAAGUUGUGAGUUUAAA ((.(((((...(((((((((((-...............)))))))))))..))))).)).......... ( -21.16, z-score = -2.26, R) >droEre2.scaffold_4845 10081521 66 + 22589142 CAUUUUCCAAGCUGAUUGCGCA---CUCGGCAUUCUUUUGCGCAAUUAGAGGGAAGUUGUGAGUUUAAA ((.(((((...(((((((((((---.............)))))))))))..))))).)).......... ( -21.32, z-score = -2.63, R) >dp4.chr3 4801102 61 - 19779522 CAUUUUCCAUGUCGAUUAAAUUCCGCACUGCAUUCUUCUGCGCAAUUAUAAGAAGUUUGAG-------- .........(((.((......)).)))...((..(((((...........)))))..))..-------- ( -7.60, z-score = 0.03, R) >droPer1.super_2 4995098 61 - 9036312 CAUUUUCCAUGUCGAUUAAAUUCCGCACUGCAUUCUUCUGCGCAAUUAUAAGAAGUUUGAG-------- .........(((.((......)).)))...((..(((((...........)))))..))..-------- ( -7.60, z-score = 0.03, R) >consensus CAUUUUCCAAGCUGAUUGCGCA___CUCGGCAUUCUUUUGCGCAAUUAGAGGGAAGUUGUGAGUUUAAA ((.(((((...((((((((((..................))))))))))..))))).)).......... (-11.85 = -13.44 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:53 2011