| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,139,242 – 3,139,350 |
| Length | 108 |
| Max. P | 0.871122 |
| Location | 3,139,242 – 3,139,350 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 63.18 |
| Shannon entropy | 0.60662 |
| G+C content | 0.32155 |
| Mean single sequence MFE | -22.93 |
| Consensus MFE | -6.49 |
| Energy contribution | -5.26 |
| Covariance contribution | -1.23 |
| Combinations/Pair | 1.70 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3139242 108 + 23011544 UUA--AAAACGGUAGUGAAGG---------CAUUAGGUUAGCUUUUAAAAUUCCCAUUAAAA----UACACAUUUAAUGCACUUUACUCAGUCUUUAAAGACAACCUGAUUC---GUUUAUGAACC--------- (((--.((((((.((((((((---------((((((((....((((((........))))))----.....))))))))).)))))))).((((....)))).........)---)))).)))...--------- ( -23.40, z-score = -2.85, R) >droEre2.scaffold_4929 3183083 108 + 26641161 UUAGCAAAAAGGUAGCCAGGGAAUAUUUCAGAUUAGGCUAGCUUUUAAAGUGACUUUAAAAA----UACAUAUUUAAUGCAUUUU-----------AAAGACGGCCUGAUUC---UUUUAUUAACC--------- ..................(..((((.....(((((((((..((((.((((((...(((((..----......)))))..))))))-----------))))..))))))))).---...))))..).--------- ( -21.30, z-score = -1.07, R) >droSec1.super_5 1290976 108 + 5866729 UUA--AAAACGGUAAUGAACG---------CAUUAGGUUAGCUCUUAAAAUUCCCAUUAAAA----UACACAUUUAAUGCACUUUACUCAGUCUUUAAAGACAACCUGAUUC---GUUUAUGAACC--------- ...--.....(((.(((((((---------.((((((((...............(((((((.----......)))))))...........((((....)))))))))))).)---))))))..)))--------- ( -24.50, z-score = -4.31, R) >droSim1.chr2L 3080430 108 + 22036055 UUA--AAAACGGUAGUGAACG---------GAUUAGGUUAGCUCUUAAAAUUCCCAUUAAAA----UACACAUUUAAUGCACUUUACUCAGUCUUUAAAGACAACCUGAUUC---GUUUAUGAACC--------- ...--.....(((.(((((((---------(((((((((...............(((((((.----......)))))))...........((((....))))))))))))))---))))))..)))--------- ( -28.70, z-score = -4.73, R) >dp4.chr4_group1 755309 132 - 5278887 UUA--AAAAGGAAAGUACCAGGAAGGUAUCGUAUCGAGGAACUUCAAAAGGUAGUCCAAGAAACUCUACAAAUUUAAUAUACUCCGC-CGUACAGUAGACACUCUUUAAAGCCAAGAACACUAAUCAAAUUAAAU ...--....(((...((((..((((...(((...)))....))))....)))).)))((((...(((((..................-......)))))...))))............................. ( -16.76, z-score = 0.72, R) >consensus UUA__AAAACGGUAGUGAACG_________GAUUAGGUUAGCUUUUAAAAUUCCCAUUAAAA____UACACAUUUAAUGCACUUUACUCAGUCUUUAAAGACAACCUGAUUC___GUUUAUGAACC_________ ...............................((((((((...............(((((((...........)))))))..(((((.........)))))..))))))))......................... ( -6.49 = -5.26 + -1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:07 2011