| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,331,635 – 13,331,736 |
| Length | 101 |
| Max. P | 0.837497 |
| Location | 13,331,635 – 13,331,736 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 68.92 |
| Shannon entropy | 0.55300 |
| G+C content | 0.49265 |
| Mean single sequence MFE | -24.91 |
| Consensus MFE | -11.29 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13331635 101 - 21146708 ----CACACCCAUGCAUGAUAUGCCUGUUGUGCUAGUGUGCGUGGCGCUUACACCGAGGACACGUCAUAAUGUCCUGUCCUCCUAUUGCUCUUAUUCUCUUCCCU------ ----.....(((((((((....(((....).))...))))))))).((.......(((((((.(.(.....).).))))))).....))................------ ( -25.40, z-score = -1.57, R) >droEre2.scaffold_4845 10071059 95 + 22589142 ----------CAUACACGAAAUGUUUGGCGUGCUAGUGUGCGUUGCGUCUAUGCCGAGGACACGUCAUAAUGUCCUUUCCUCCUAUUGCUCUUAUUCUUUUCCCU------ ----------.......((((.....((((..(....)..))))(((........(((((((........))))))).........))).........))))...------ ( -17.73, z-score = -0.12, R) >droYak2.chr2R 3003085 95 + 21139217 ----------CACACACGAAUUGCUUGGCGUGCAAGUGUGCGUGGCGCCUUUGCGGAGGACACGUCAUAAUGUCCUGUCCUCCUAUUGCUCUUAUUCUCUUCCCU------ ----------.......((((.....((((.(((((.((((...)))).)))))((((((((.(.(.....).).))))))))...))))...))))........------ ( -28.80, z-score = -1.81, R) >droSec1.super_1 10832945 99 - 14215200 ------CACCCAUGUACGAAAUGCCUGUUGUGCUAGUGUGCGUGGCGCCUACACCGAGGACACGUCAUAGUGUCCUGCCCUCCUAUUGCUCUUAUUCUCUUCCCU------ ------...(((((((((....(((....).))...)))))))))...........(((((((......))))))).............................------ ( -25.40, z-score = -1.58, R) >droSim1.chr2R 12073059 105 - 19596830 CACACACACCCAUGUACGAAAUGCCUGUUGUGCUAGUGUGCGUGGCGCCUACACCGAGGACACGUCAUAGUGUCCUGUCCUCCUAUUGCUCUUAUUCUCUUCCCU------ (((.(((((....((((((........))))))..))))).)))(((.........(((((((......)))))))..........)))................------ ( -27.41, z-score = -1.50, R) >droGri2.scaffold_15245 7534211 87 - 18325388 ------------------CAAUAACAGUUGCACUA----ACAUCGCUGCUAUGCUGUGACCGCUUCAAA--GUUCACUUUUAACAGUGACUUUAAGCUGGUCAACAUACUU ------------------.....(((((.((((..----.....).)))...)))))((((((((.(((--((.((((......))))))))))))).))))......... ( -24.70, z-score = -3.31, R) >consensus __________CAUGCACGAAAUGCCUGUUGUGCUAGUGUGCGUGGCGCCUACACCGAGGACACGUCAUAAUGUCCUGUCCUCCUAUUGCUCUUAUUCUCUUCCCU______ ......................(((...(((((....))))).)))..........((((((........))))))................................... (-11.29 = -11.68 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:52 2011