Locus 4478

Sequence ID dm3.chr2R
Location 13,330,695 – 13,330,791
Length 96
Max. P 0.773954
window6130

overview

Window 0

Location 13,330,695 – 13,330,791
Length 96
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 90.20
Shannon entropy 0.16654
G+C content 0.50476
Mean single sequence MFE -30.58
Consensus MFE -25.38
Energy contribution -25.94
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.83
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.773954
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 13330695 96 - 21146708
GCCAGUGCUGGUGA----------AUAUAUUUAAGCCAAAUCCCCGAGCCAGGCUGCCUGGAAACAGAGCGAGGAAAGCCAAGUGGGAACUUGGCACGUAACUCAC
(((.(.(((((.((----------................)).)).)))).))).(((((....))).))(((..(.(((((((....)))))))...)..))).. ( -31.09, z-score =  -1.54, R)
>droSim1.chr2R 12072105 96 - 19596830
GCCAGUGCUGGUGA----------AUAUAUUUAAGCCAAAUCCCCGAGCCAGGCUGCAUGGAAACAGAGCGAGGAAAGCCAAGUGGAAACUUGGCACGUAACUCAC
(((.(.(((((.((----------................)).)).)))).))).((.((....))..))(((..(.(((((((....)))))))...)..))).. ( -29.19, z-score =  -1.65, R)
>droSec1.super_1 10832232 96 - 14215200
GCCAGUGCUGGUGA----------AUAUAUUUAAGCCAAAUCCCCGAGCCAGGCUGCAUGGAAACAGAGCGAGGAAAGCCAAGUGGAAACUUGGCACGUAACUCAC
(((.(.(((((.((----------................)).)).)))).))).((.((....))..))(((..(.(((((((....)))))))...)..))).. ( -29.19, z-score =  -1.65, R)
>droYak2.chr2R 3002136 96 + 21139217
GCCAGUGCUGGUGA----------AUAUAUUUUAGCCAAAUCCCAGAGCCAGGCUACUUGGUGUGAGAGCGAGGAAAGCCAAGUGGAAACUUGGCACGUAACUCAC
((((((((((((..----------....((((.....))))......)))).)).)).))))((....))(((..(.(((((((....)))))))...)..))).. ( -28.20, z-score =  -0.96, R)
>droEre2.scaffold_4845 10070094 106 + 22589142
GCCAGUGCUGGCGAAUAUAUAUACAUAUAUUUAAGCCAAAUCUCAGUGCCAGGCUGCCUGGAAACAGAGCGAGGAAAGCCAAGUCGAAACUUGGCACGUAACUCAC
(((.(..(((((((((((((....))))))))..))).......))..)..))).(((((....))).))(((..(.(((((((....)))))))...)..))).. ( -35.21, z-score =  -3.34, R)
>consensus
GCCAGUGCUGGUGA__________AUAUAUUUAAGCCAAAUCCCCGAGCCAGGCUGCAUGGAAACAGAGCGAGGAAAGCCAAGUGGAAACUUGGCACGUAACUCAC
((((....)))).....................((((..............))))(((((....))).))(((..(.(((((((....)))))))...)..))).. (-25.38 = -25.94 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:51 2011