| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,324,184 – 13,324,276 |
| Length | 92 |
| Max. P | 0.795053 |
| Location | 13,324,184 – 13,324,276 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.21 |
| Shannon entropy | 0.60851 |
| G+C content | 0.47152 |
| Mean single sequence MFE | -26.80 |
| Consensus MFE | -15.14 |
| Energy contribution | -15.03 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13324184 92 - 21146708 ---------CGCUGUAACUAAACGAGCGCGCGUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUUGGAACAGGCGCUCAGUUUUUCAAGCAGCGCUGCUG---- ---------.(((((......)).)))(((((.(((((((.(((.......-....)))((((((.......)))))).........)))))))))).))..---- ( -27.60, z-score = 0.06, R) >droSim1.chr2R 12065439 92 - 19596830 ---------CGCUGUAACUAAACGAGCGCGCGUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUUGGAACAGGCGCUCAGUUUUUCGAACAGCGCUGCUG---- ---------.(((((......)).)))(((((.(((((((.(((.......-....)))((((((.......)))))).........)))))))))).))..---- ( -27.30, z-score = -0.03, R) >droYak2.chr2R 2995286 92 + 21139217 ---------CGCUGUAACUACACGAGCGAGCGUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUUGGAACAGGCGCUCAGUUUUUCAAGCAGCGCUGCUG---- ---------((((((........(((((((((((((((((((((.......-....))))).......)))))))))))).)))).....))))))......---- ( -29.63, z-score = -0.87, R) >droEre2.scaffold_4845 10063376 92 + 22589142 ---------CGCUGUAACUACACGAGCGCGCGUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUUGGAACAGGCGCGCAGUUUUUCAAGCAGCGCUGCUG---- ---------((((((........(((((((((((((((((((((.......-....))))).......)))))))))))).)))).....))))))......---- ( -30.93, z-score = -0.45, R) >droAna3.scaffold_13266 8818718 85 - 19884421 ---------CGCUGUAACUAUUC-CGCGGG-GUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUUGGAACAGGCGCGCAGUUUUCCAAGCAGCGA--------- ---------((((((..(.....-.).(((-(.((((....(((.......-....)))((((((.......))))))))))..))))..)))))).--------- ( -23.40, z-score = -0.04, R) >dp4.chr3 4787401 98 - 19779522 --------CGCUGUAAAUAACUAUUUCGCGCGUUUGUUUGUUGUUUUUAAGUUUUUACAGCGCCUUAUUAACAGGCGCACAGCGAAAAGCGAACGCCAACUGGCGG --------(((((..((.......))..)(((((((((((((((......((....)).((((((.......)))))))))))))...)))))))).....)))). ( -30.70, z-score = -1.58, R) >droPer1.super_2 4981400 98 - 9036312 --------CGCUGUAAAUAACUAUUUCGCGCGUUUGUUUGUUGUUUUUAAGUUUUUACAGCGCCUUAUUAACAGGCGCACAGCGAAAAGCGAACGCCAACUGGAGG --------............(((.((.(.(((((((((((((((......((....)).((((((.......)))))))))))))...))))))))))).)))... ( -27.00, z-score = -0.75, R) >droWil1.scaffold_181141 740983 104 + 5303230 UGCUGUAAGUUGGACAAAAACUAUUUCGCGCGUUUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUAUUAACAGGCGCACAGCGAAAGAAGCUCAGCCACAACUG- .((((..((((.......)))).(((((((((((((((((((((.......-....)))))).......)))))))))...))))))......))))........- ( -25.11, z-score = 0.17, R) >droVir3.scaffold_12875 7766067 75 + 20611582 ---------------------UUUCGCGCGCGUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUAUUAACAGGCGCGCAGCGAAAAAAGCACAGC--------- ---------------------(((((((((((((((((((((((.......-....)))))).......))))))))))).))))))..........--------- ( -29.21, z-score = -3.29, R) >droMoj3.scaffold_6496 6760582 75 + 26866924 ---------------------UUUCGCGCGCGUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUAUUAACAGGCGCACAGCGCCAACAGCACAAC--------- ---------------------....(((((((((((((((((((.......-....)))))).......)))))))))...))))............--------- ( -21.61, z-score = -1.64, R) >droGri2.scaffold_15245 7523284 81 - 18325388 ---------------UUUCGCGCGCUCUCGCGUCUGUUUGUUGUUUUUAAG-UUUUACAGCGCCUUAUUAACAGGCGCACAGCGAAAAAAGCUCAGU--------- ---------------((((((((((....))))..................-.......((((((.......))))))...))))))..........--------- ( -22.30, z-score = -0.70, R) >consensus _________CGCUGUAACUACUCGAGCGCGCGUCUGUUUGUUGUUUUUAAG_UUUUACAGCGCCUUAUUAACAGGCGCACAGCGAAAAAAGCACCGC__CUG____ .............................(((((((((((((((............)))))).......)))))))))............................ (-15.14 = -15.03 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:50 2011