| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,322,757 – 13,322,849 |
| Length | 92 |
| Max. P | 0.973339 |
| Location | 13,322,757 – 13,322,849 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 63.28 |
| Shannon entropy | 0.73739 |
| G+C content | 0.40473 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -8.52 |
| Energy contribution | -8.66 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.78 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.973339 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13322757 92 + 21146708 AACGCGGAGUGCAACUGGUUUUC-AUGCAUUCGCAAUGUGUGUAUACAUA---UACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGAC ...(((.((((((..((.....)-))))))))))(((((.((((((....---...)))))).)))))......((((((((....)))))))).. ( -27.70, z-score = -2.96, R) >droSim1.chrU 8834021 92 + 15797150 AACGCGGAGUGCAACUGGUUUUC-AUGCAUUCGCGAUGUGUGUAUACAUA---UACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGAC ..((((.((((((..((.....)-)))))))))))((((.((((((....---...)))))).)))).......((((((((....)))))))).. ( -28.90, z-score = -3.14, R) >droSec1.super_1 10824063 92 + 14215200 AACGCGGAGUGCAACUGGUUUUC-AUGCAUUCGCGAUGUGUGUAUACACA---UACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGAC ..((((.((((((..((.....)-)))))))))))((((.((((((....---...)))))).)))).......((((((((....)))))))).. ( -28.90, z-score = -3.04, R) >droYak2.chr2R 2993771 96 - 21139217 AACGCAGAGUGCAACUGGUUUUCCAUGCAUUUUCAAUGUGUGUAUACGUAGUAUACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGAC ...(.((((((((..(((....))))))))))))(((((.((((((.(((...))))))))).)))))......((((((((....)))))))).. ( -28.70, z-score = -3.15, R) >droEre2.scaffold_4845 10061766 95 - 22589142 AACGCGGAGUGCAACUGGUUUUC-AUGCAUUCUCAAUGUGUGUAUACAACGUAUACUAUGUAAACAUUCCUAACCCGAGUUCAAUGGAACUUGGAC .....((((((......((...(-((((((.....)))))))...)).(((((...)))))...))))))....((((((((....)))))))).. ( -25.20, z-score = -1.85, R) >dp4.chr3 4786099 79 + 19779522 ACAGAGAAGUGCAACUGGUUUCU---GAGCUGAUCUUGUGUGGCUGU------UGUUCUUUGGAUCUU--------GAGUUCCAUUGAACUUAGGG .((((((...(((((.(((..((---(((.....)))).)..)))))------)))))))))...(((--------((((((....))))))))). ( -21.40, z-score = -0.76, R) >droPer1.super_2 4980111 79 + 9036312 ACAGAGAAGUGCAACUGGUUUCU---GAGCUGAUCUUGUGUGGCUGU------UGUUCUUUGGAUCUU--------GAGUUCCAUUGAACUUAGGG .((((((...(((((.(((..((---(((.....)))).)..)))))------)))))))))...(((--------((((((....))))))))). ( -21.40, z-score = -0.76, R) >droGri2.scaffold_15245 7521821 95 + 18325388 CCAUUAAAUUGUCAAUUCCUGUUGUCAAAUUUCCAUUAACAAAUUGUACAAC-AAAAAAAUUUUUAACGCUAGAUUAGAACGAAUGAAAAUGGAAC (((((......(((.(((.((((((..(((((........)))))..)))))-).......(((((((....).)))))).)))))).)))))... ( -11.10, z-score = 0.03, R) >consensus AACGCGGAGUGCAACUGGUUUUC_AUGCAUUCGCAAUGUGUGUAUACAUA___UACUAUAUAGACAUUCCUAACCCGAGUUCAAUGGAACUUGGAC ...................................((((.((((((..........)))))).)))).......((((((((....)))))))).. ( -8.52 = -8.66 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:49 2011