| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,299,190 – 13,299,281 |
| Length | 91 |
| Max. P | 0.945438 |
| Location | 13,299,190 – 13,299,281 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 64.79 |
| Shannon entropy | 0.49253 |
| G+C content | 0.53644 |
| Mean single sequence MFE | -13.46 |
| Consensus MFE | -8.07 |
| Energy contribution | -8.07 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13299190 91 + 21146708 GUCCGCCACUUUAUACCUCUCCCGCCCCCUCCUCAUCGUCAACCUAACAACUUUUGCACCAUUUUGCUAUUGCAAUUCUUCGGGGCGAUUA ......................((((((.........((.......))...............((((....))))......)))))).... ( -15.20, z-score = -2.31, R) >droEre2.scaffold_4845 10038005 69 - 22589142 ------------------GCCCCACUUCUCCCCCGCCC----CCCAACAGCAUUUGCACCAUUUUGCUAUUGCAAUUCUUCGGCGCGAUUA ------------------..............(((((.----.......(((...(((......)))...)))........)))).).... ( -11.49, z-score = -1.74, R) >droYak2.chr2R 2970073 78 - 21139217 -GCCCCCACUUUGCUCC----CCACCUCCCCCCCGCCG--------AAAACUUUUGCACCAUUUUGCCAUUGCAAUUCUUCGGGGCGAUUA -(((((...........----.............((.(--------(.....)).))......((((....))))......)))))..... ( -13.70, z-score = -0.98, R) >consensus __CC_CCACUUU___CC___CCCACCUCCCCCCCGCCG____CC_AACAACUUUUGCACCAUUUUGCUAUUGCAAUUCUUCGGGGCGAUUA .....................................................((((.((...((((....))))......)).))))... ( -8.07 = -8.07 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:47 2011