| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,286,607 – 13,286,715 |
| Length | 108 |
| Max. P | 0.517794 |
| Location | 13,286,607 – 13,286,715 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.78 |
| Shannon entropy | 0.47044 |
| G+C content | 0.51665 |
| Mean single sequence MFE | -32.05 |
| Consensus MFE | -16.25 |
| Energy contribution | -19.78 |
| Covariance contribution | 3.53 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13286607 108 + 21146708 UUCUCACCUGU-CCCCGUGUGCAGGUGUUUCAAUCGCAAAGUUGGCGUCUGAAUCUCGACUUAAGGUUCGAGUUUCUAAGCGAGGCUGGCCCCGCAGGUCACAUUCAGU-- ....((((((.-.(....)..)))))).......(((.......))).((((((...(((((..((..(.((((((.....)))))).)..))..)))))..)))))).-- ( -32.40, z-score = -1.06, R) >droSim1.chr2R 12026439 108 + 19596830 UUCUCACCUGU-CUCCGUGUGCAGGUGUUUCAAUCGCAAAGUUGGCGUCUGAAUCUCGACUUAAGGUUCGAGUUUCUAAGCGAGGCUGGCCCCUCAGGUCACAUUCAGU-- ....(((((((-........))))))).......(((.......))).((((((...(((((.(((..(.((((((.....)))))).)..))).)))))..)))))).-- ( -33.60, z-score = -1.83, R) >droSec1.super_1 10787706 108 + 14215200 UUCUCACCUGU-CGCCGUUUGCAGGUGUUUCAAUCGCAAAGUUGGCGACUGAAUUUCGACUUAAGGUUCGAGUUUCUAAGCGAUGCUAGCCCCGCACGUCAUAUUCAGU-- .........((-((((((((((.(((......))))))))..)))))))(((((...(((....((..(.(((.((.....)).))).)..))....)))..)))))..-- ( -28.60, z-score = -0.77, R) >droYak2.chr2R 2957072 110 - 21139217 UGCCCACCUGU-CCCCGUGUGCAGGUGUCUCAAUCGCAAAGUUGGAGACUGAAUCUCGACUUAAGGUGCGAGUUUCUAAGCGAGACUGGCCCCUCAGGUCACAUUCAGAGU ....((((((.-.(....)..))))))((((...(.....)...))))((((((...(((((.(((.((.((((((.....)))))).)).))).)))))..))))))... ( -39.80, z-score = -2.40, R) >droEre2.scaffold_4845 10025472 105 - 22589142 UUCUCACCUGUACCCCAUGUGCAGGUGUCUCAAUCGCAAAGUUGCAGACUGUAUCUCGACUUAAGGUUCGAGUUUCUAAGCGAGGCUGGCCCCUCAGGUCACAUU------ .....((((((((.....))))))))((((((((......)))).))))........(((((.(((..(.((((((.....)))))).)..))).))))).....------ ( -34.70, z-score = -2.63, R) >droAna3.scaffold_13266 6542813 87 - 19884421 -------------CCUGACUGCAGGUGUCUCAAUCUCCG---------CCAGACCCUG--UUGGAGUUUUAGUUUUCGAGUCAGAGGGGCCAGCCAGGUCACAUUCAGCAU -------------.(((((((((((.((((.........---------..))))))))--)(((((.......)))))))))))...((((.....))))........... ( -23.20, z-score = 0.36, R) >consensus UUCUCACCUGU_CCCCGUGUGCAGGUGUCUCAAUCGCAAAGUUGGCGACUGAAUCUCGACUUAAGGUUCGAGUUUCUAAGCGAGGCUGGCCCCUCAGGUCACAUUCAGU__ ....(((((((.........))))))).....................((((((...(((((.(((..(.((((((.....)))))).)..))).)))))..))))))... (-16.25 = -19.78 + 3.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:46 2011