| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,271,702 – 13,271,755 |
| Length | 53 |
| Max. P | 0.944295 |
| Location | 13,271,702 – 13,271,755 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 96.98 |
| Shannon entropy | 0.05449 |
| G+C content | 0.49057 |
| Mean single sequence MFE | -14.84 |
| Consensus MFE | -14.22 |
| Energy contribution | -14.30 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13271702 53 - 21146708 UGUGGGCAUAUGGAUUCUGCCCCCUGGAAUCCGCUUUUAUGUAAAACACCUUG .(((.(((((((((((((.......))))))))....)))))....))).... ( -14.10, z-score = -1.77, R) >droSim1.chr2R 12010689 53 - 19596830 UGUGGGCAUAUGGAUUCUGCCCCCUGGAAUCCGCUUUUAUGCAAAACACCUUG .(((.(((((((((((((.......))))))))....)))))....))).... ( -15.70, z-score = -2.11, R) >droSec1.super_1 10772727 53 - 14215200 UGUGGCCAUAUGGAUUCUGCCCCCUGGAAUCCGCUUUUAUGCAAAACACCUUG .(((.......(((((((.......)))))))((......))....))).... ( -13.00, z-score = -1.77, R) >droYak2.chr2R 2940908 53 + 21139217 UGUGGGCAUAUGGAUUCUGCCCCCUGGAAUCCGCUUUUAUGCAAAACACCUCC .(((.(((((((((((((.......))))))))....)))))....))).... ( -15.70, z-score = -2.01, R) >droEre2.scaffold_4845 10009717 53 + 22589142 UGUGGGCAUAUGGAUUCUGCCCCCUGGAAUCCGCUUUUAUGCAAAACACCUUG .(((.(((((((((((((.......))))))))....)))))....))).... ( -15.70, z-score = -2.11, R) >consensus UGUGGGCAUAUGGAUUCUGCCCCCUGGAAUCCGCUUUUAUGCAAAACACCUUG .(((.(((((((((((((.......))))))))....)))))....))).... (-14.22 = -14.30 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:44 2011