Locus 4469

Sequence ID dm3.chr2R
Location 13,265,352 – 13,265,407
Length 55
Max. P 0.919736
window6119 window6120

overview

Window 9

Location 13,265,352 – 13,265,407
Length 55
Sequences 5
Columns 55
Reading direction forward
Mean pairwise identity 98.55
Shannon entropy 0.02625
G+C content 0.48364
Mean single sequence MFE -15.06
Consensus MFE -15.34
Energy contribution -15.02
Covariance contribution -0.32
Combinations/Pair 1.13
Mean z-score -0.72
Structure conservation index 1.02
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.593077
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 13265352 55 + 21146708
GUAUGUGUAGAUUGGCAUGUCAUUUGACAUGGCCACGCAUGUAGAAUAGCACGAG
.(((((((....(((((((((....))))).)))).)))))))............ ( -15.30, z-score =  -1.21, R)
>droEre2.scaffold_4845 10001021 55 - 22589142
GUAUGUGUAGAUUGGCGUGUCAUUUGACAUGGCCGCGCAUGUAGAAUAGCACGAG
.(((((((.....((((((((....))))).)))))))))).............. ( -15.00, z-score =  -0.59, R)
>droYak2.chr2R 2934495 55 - 21139217
GUAUGUGUAGAUUGGCGUGUCAUUUGACAUGGCCGCGCAUGUAGAAUAGCACGAG
.(((((((.....((((((((....))))).)))))))))).............. ( -15.00, z-score =  -0.59, R)
>droSec1.super_1 10766319 55 + 14215200
GUAUGUGUAGAUUGGCGUGUCAUUUGACAUGGCCGCGCAUGUAGAAUAGCACGAG
.(((((((.....((((((((....))))).)))))))))).............. ( -15.00, z-score =  -0.59, R)
>droSim1.chr2R 12004325 55 + 19596830
GUAUGUGUAGAUUGGCGUGUCAUUUGACAUGGCCGCGCAUGUAGAAUAGCACGAG
.(((((((.....((((((((....))))).)))))))))).............. ( -15.00, z-score =  -0.59, R)
>consensus
GUAUGUGUAGAUUGGCGUGUCAUUUGACAUGGCCGCGCAUGUAGAAUAGCACGAG
.(((((((.....((((((((....))))).)))))))))).............. (-15.34 = -15.02 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 13,265,352 – 13,265,407
Length 55
Sequences 5
Columns 55
Reading direction reverse
Mean pairwise identity 98.55
Shannon entropy 0.02625
G+C content 0.48364
Mean single sequence MFE -13.24
Consensus MFE -12.08
Energy contribution -11.92
Covariance contribution -0.16
Combinations/Pair 1.09
Mean z-score -2.24
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.27
SVM RNA-class probability 0.919736
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 13265352 55 - 21146708
CUCGUGCUAUUCUACAUGCGUGGCCAUGUCAAAUGACAUGCCAAUCUACACAUAC
(.((((........)))).)((((.(((((....)))))))))............ ( -12.60, z-score =  -1.61, R)
>droEre2.scaffold_4845 10001021 55 + 22589142
CUCGUGCUAUUCUACAUGCGCGGCCAUGUCAAAUGACACGCCAAUCUACACAUAC
...((((..........))))(((..((((....)))).)))............. ( -13.40, z-score =  -2.39, R)
>droYak2.chr2R 2934495 55 + 21139217
CUCGUGCUAUUCUACAUGCGCGGCCAUGUCAAAUGACACGCCAAUCUACACAUAC
...((((..........))))(((..((((....)))).)))............. ( -13.40, z-score =  -2.39, R)
>droSec1.super_1 10766319 55 - 14215200
CUCGUGCUAUUCUACAUGCGCGGCCAUGUCAAAUGACACGCCAAUCUACACAUAC
...((((..........))))(((..((((....)))).)))............. ( -13.40, z-score =  -2.39, R)
>droSim1.chr2R 12004325 55 - 19596830
CUCGUGCUAUUCUACAUGCGCGGCCAUGUCAAAUGACACGCCAAUCUACACAUAC
...((((..........))))(((..((((....)))).)))............. ( -13.40, z-score =  -2.39, R)
>consensus
CUCGUGCUAUUCUACAUGCGCGGCCAUGUCAAAUGACACGCCAAUCUACACAUAC
...((((..........))))(((..((((....)))).)))............. (-12.08 = -11.92 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:43 2011