| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,262,190 – 13,262,284 |
| Length | 94 |
| Max. P | 0.550069 |
| Location | 13,262,190 – 13,262,284 |
|---|---|
| Length | 94 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 70.17 |
| Shannon entropy | 0.58292 |
| G+C content | 0.65039 |
| Mean single sequence MFE | -42.42 |
| Consensus MFE | -15.72 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13262190 94 - 21146708 -----CCCCUUCUUCUAGAUGCAUGUCGAUGGAGACG-CCACUGUU-------------GCCGGC--GCCACCGUUAUCGU--GGUGGCCGGAAUGGCCGCCACAGUAGUGGCCACC -----.....(((((..(((....)))...))))).(-((((((..-------------..(((.--....))).....((--(((((((.....)))))))))..))))))).... ( -37.90, z-score = -1.64, R) >droSim1.chr2R 12001190 94 - 19596830 -----CCCCUUCUUCUAGAUGCAUGUCGAUGGAGACG-CCACUGUU-------------GCCGGC--GCCACCGUUAUCGU--GGUGGCCGGAAUGGCCGCCACGGUAGUGGCCACC -----.....(((((..(((....)))...))))).(-((......-------------...)))--(((((...((((((--(((((((.....)))))))))))))))))).... ( -41.70, z-score = -2.27, R) >droSec1.super_1 10763201 94 - 14215200 -----CCCCUUCUUCUAGAUGCAUGUCGAUGGAGACG-CCACUGUU-------------UCCGGC--GCCACCGUUAUCGU--GGUGGCCGGAAUGGCCGCCACGGUAGUGGCCACC -----.....(((((..(((....)))...))))).(-((......-------------...)))--(((((...((((((--(((((((.....)))))))))))))))))).... ( -41.70, z-score = -2.67, R) >droYak2.chr2R 2931383 94 + 21139217 -----CCCCUUCUUCUAGAUGCAUGCCGAUGGAGACG-CCACUGUG-------------GCCGGC--GCCACUGUUAUCGU--GGUGGCUGGAAUGGCCGCCACUGUGGUGGCCACC -----.......(((((.......((((..(....)(-((.....)-------------))))))--(((((..(....).--.))))))))))((((((((.....)))))))).. ( -41.40, z-score = -1.91, R) >droEre2.scaffold_4845 9997945 94 + 22589142 -----CCCCUUCUCCUAGAUGCAUGUCGAUGGAGACG-CCACUGUG-------------GCCGGC--GCCACUGUUAUCGU--GGUGGCCGGUAUGGCCGCCACGGUGGUGGCCACC -----.....(((((..(((....)))...))))).(-((((((((-------------((....--)))))....(((((--(((((((.....)))))))))))))))))).... ( -49.00, z-score = -3.09, R) >droAna3.scaffold_13266 6518038 99 + 19884421 CUCCUCCCUGAAUCCUAGAUGCAUGUGGAUGGAGCUG-CCACCGUG-------------GCCGGC--GCCAUGCUAAUCGU--GGUGGCCGGAAUGGCCGCCACCGUGGUGGCCACC .(((((((((.(((...))).)).).))).)))((..-((((((((-------------((....--))))))......((--(((((((.....))))))))).))))..)).... ( -45.30, z-score = -1.93, R) >dp4.chr3 16818690 106 - 19779522 -----GCCUGCCAGUUAGAUGCAAGUCGAUGGUGCCA-CGACCGUGGGUCCUGCUG-CUGCCGGC--GCCACACUGAUCGU--GGUGGCCGGCAUGGCCGUCACUGUGGUGGCCACC -----....((.(((..(((.((.((((.((....))-))))..)).)))..))))-)(((((((--(((((.......))--))).)))))))(((((..(.....)..))))).. ( -48.10, z-score = -0.41, R) >droPer1.super_34 8369 112 - 916997 -----CCCGGCCCACCAGCUCCCGGUCGAUGUCGAUGCCCAGUAUGGUCUUCGGGGCCAGGUGGCGGGCCACCGUGAUGGUCAUGUGGCCCACGUUGCAGCCAAUGUCCAGGAUGUC -----((.((.(((((.((.((((((((....))))(((......)))...))))))..))))).(((((((.(((.....))))))))))((((((....)))))))).))..... ( -45.50, z-score = 0.37, R) >droVir3.scaffold_12875 7988055 80 - 20611582 -------------------UGCAGGAUGAGGGCGCGG-CUAUUGUG-------------GCCGGC--GUAACGGUGAUUGU--GGUGGCCGGCAGAGCAGCCACUGUGGUGGCCACC -------------------.((((.......((((((-((.....)-------------))).))--))........))))--((((((((.((.((......)).)).)))))))) ( -33.86, z-score = -0.56, R) >droMoj3.scaffold_6496 7582583 86 + 26866924 -------------UCUAGAUGCAGGAUGAGGGCGCGG-CUAUGGUG-------------GCCGGC--GUCACGGUGAUUGU--GGUGGCUGGCAGGGCGGCCACUGUGGUUGCCACC -------------..........((.....(((((((-((.....)-------------))).))--)))..((..((..(--((((((((......)))))))))..))..)).)) ( -39.70, z-score = -1.56, R) >consensus _____CCCCUUCUUCUAGAUGCAUGUCGAUGGAGACG_CCACUGUG_____________GCCGGC__GCCACCGUUAUCGU__GGUGGCCGGAAUGGCCGCCACUGUGGUGGCCACC ............................................................(((((....(((............))))))))..(((((((.......))))))).. (-15.72 = -16.38 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:42 2011