| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,234,977 – 13,235,069 |
| Length | 92 |
| Max. P | 0.657451 |
| Location | 13,234,977 – 13,235,069 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.56 |
| Shannon entropy | 0.64458 |
| G+C content | 0.38740 |
| Mean single sequence MFE | -20.25 |
| Consensus MFE | -8.66 |
| Energy contribution | -8.91 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13234977 92 + 21146708 CGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUU--GUUCGGCAAAAAAAAAAGGGGGAAAAAAU--------------- .(((....((((.......((((((....))))))((((..((.....))..))))....)))--)...)))......................--------------- ( -16.20, z-score = -0.27, R) >droSim1.chr2R 11968972 92 + 19596830 CGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUU--GUUCGGCAAAAAAAAAAAGGGGGAAAAAU--------------- .(((....((((.......((((((....))))))((((..((.....))..))))....)))--)...)))......................--------------- ( -16.20, z-score = -0.27, R) >droSec1.super_1 10735976 92 + 14215200 CGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUU--GUUCGGCAAAAAAAAAAAGGGGAAAAAAU--------------- .(((....((((.......((((((....))))))((((..((.....))..))))....)))--)...)))......................--------------- ( -16.20, z-score = -0.53, R) >droYak2.chr2R 2902788 88 - 21139217 CGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUU--GUUCGGCAAAAAAAAA----GGGAAAAAU--------------- .(((....((((.......((((((....))))))((((..((.....))..))))....)))--)...))).........----.........--------------- ( -16.20, z-score = -0.73, R) >droEre2.scaffold_4845 9970915 86 - 22589142 CGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAGAGUU--GUUCGG--AAAAAAAA----GGGAAAAAU--------------- ..((((...(((((((...((((((....))))))((((..((.....))..))))..))).)--)))..)--))).....----.........--------------- ( -17.30, z-score = -1.27, R) >droAna3.scaffold_13266 6490629 92 - 19884421 CGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCCAAAUUGAAGAAAAGUAGCUAAACUU-ACUAUGGGAA----ACUAGGGUGGAAGGGCAGA------------ .(((.....))).......((((((....))))))(((...........((((......))))-(((.(((...----.))).))).....)))...------------ ( -22.50, z-score = -1.30, R) >dp4.Unknown_group_205 5342 103 + 12543 CGUUUUAUUAACAUUCAAAGACGAUUCGUAUCGCGGCUAAAUUGAAGAAAAGUAGCUAUCGCCCCCCGUCCCACCCCCUCUCCCCCUCCAGUAGGGGGGGCCU------ .(((.....))).......((((((....)))(((((((..((.....))..))))...))).....)))((.((((((((........)).))))))))...------ ( -23.70, z-score = 0.36, R) >droPer1.super_3184 315 97 + 2753 CGUUUUAUUAACAUUCAAAGACGAUUCGUAUCGCGGCUAAAUUGAAGAAAAGUAGCUAUCGCCCCC-GUCCCACCCCCUC-----CAGGGGGGGGGGGGGCCU------ .(((.....))).......(.((((....)))))(((((..((.....))..)))))...((((((-..(((.(((((..-----..))))))))))))))..------ ( -37.80, z-score = -1.66, R) >droWil1.scaffold_181009 3049057 109 - 3585778 CGUUUUAUUAACAUUCAAAGGCGAUUUCUAUCGUCGCCAAAUUGAAGAAAAGUAGCUAAAAUUGAGUAUACAGAUAAGGCUACUACAAAAAGACAGAACGAGAGAUAUA ((((((.......(((((.((((((.......))))))...)))))....(((((((....(((......)))....)))))))..........))))))......... ( -23.40, z-score = -2.89, R) >droMoj3.scaffold_6496 7544955 98 - 26866924 CAUUUUAUUAACAUUCAAAGGCGAUUUCUAUCGUCGCCAAAUUGAAGAAAAGUAGCUAAACUU--G------AAAAGGACUCGCACAAAAAAAUGGGGGGGGGGGG--- ((((((.......(((((.((((((.......))))))...))))).....((.((....(((--.------...)))....))))...))))))...........--- ( -17.20, z-score = -0.38, R) >droVir3.scaffold_12875 7953760 86 + 20611582 CAUUUUAUUAACAUUCAAAGGCGAUUUCUAUCGUCGCCAAAUUGAAGAAAAGUAGCUAAACUU--A------AAAGGGACUCACCAAAAAAAAA--------------- ....(((((....(((((.((((((.......))))))...)))))....)))))........--.------...((......)).........--------------- ( -13.70, z-score = -1.68, R) >droGri2.scaffold_15245 1450584 101 + 18325388 CAUUUUAUUAACAUUCAAAGGCGAUUUCUAUCGUCGCCAAAUUGAAGAAAAGAAGCUAAACCU--UU---GCAAAAGGACUUGCAAAAAAAAAUGCGAGUAUAAGC--- .............(((((.((((((.......))))))...)))))........(((...(((--(.---....))))(((((((........)))))))...)))--- ( -22.60, z-score = -2.47, R) >consensus CGUUUUAUUAACAUUCAAAGGCGAUUCCUAUCGCCGCUAAAUUGAAGAAAAGUAGCUAAAGUU__GUUCGGCAAAAAAACUAGCGGGAAAAAAU_______________ ....(((((....(((((.((((((....))))))......)))))....)))))...................................................... ( -8.66 = -8.91 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:39 2011