| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,227,688 – 13,227,784 |
| Length | 96 |
| Max. P | 0.912581 |
| Location | 13,227,688 – 13,227,784 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.65 |
| Shannon entropy | 0.42542 |
| G+C content | 0.35636 |
| Mean single sequence MFE | -13.15 |
| Consensus MFE | -10.29 |
| Energy contribution | -10.64 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.912581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13227688 96 + 21146708 GCUGCGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGUUUUUUCACCCAGCACUC----ACCUCUCCUUAU--UUUUAUAUGCG------------- ((((.(((((.(((..........))).)))))...(((((.........)))))..........))))....----............--...........------------- ( -13.30, z-score = -1.76, R) >droSim1.chrU 15511753 99 + 15797150 GCUGCGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGUAUUUCCACCCAGCACCU-CUCACCUCUCCUUAU--UUUUAUAUGCG------------- ((((.(((((.(((..........))).)))))...(((((.........)))))..........))))....-...............--...........------------- ( -13.30, z-score = -2.00, R) >droSec1.super_1 10728684 99 + 14215200 GCUGCGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGUAUUUCCACCCAGCACCU-CUCACCUCUCCUUAU--UUUUAUAUGCG------------- ((((.(((((.(((..........))).)))))...(((((.........)))))..........))))....-...............--...........------------- ( -13.30, z-score = -2.00, R) >droYak2.chr2R 2895251 102 - 21139217 GCUGCGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGUAUUUCCACCCAGCGCUCGCUCACCUCUCCUUAUAUUUUUAUAUGUG------------- ((.((((.......((((((.((((((.....((....)).....)))))).)))))).........))))..))...........................------------- ( -13.79, z-score = -0.97, R) >droEre2.scaffold_4845 9963615 96 - 22589142 GCUGCGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGUAUUUCCACCCAGCGCUC----ACCUCUCCCCAU--UUUUAUGUGCG------------- ((((.(((((.(((..........))).)))))...(((((.........)))))..........))))((.(----(...........--.....)).)).------------- ( -14.19, z-score = -1.46, R) >droAna3.scaffold_13266 6483407 115 - 19884421 GCUGUGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGUUUUUUUUUACUGAGACUACCCCCUACGCCCCACCUCUGCCCCUUUCACCUCUCUGUGUG ...(((((((.(((..........))).))))))).(((((.........)))))........(((.((((...........((.........))..........)))).))).. ( -12.50, z-score = -0.87, R) >droWil1.scaffold_181009 3039715 95 - 3585778 GCUGCGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGGUUCUUUUUUUUUUG-----CUCCAACAUUCCAUUUCUCUGCACA--------------- ..((((((((.(((..........))).)))))..((((((.........))))))..............-----....................)))..--------------- ( -11.70, z-score = -0.25, R) >consensus GCUGCGCAAUAACUGUACAUUAAAAGUCAUUGCAUUCAUGAUAUUAUUUUUUAUGUAUUUCCACCCAGCGCCC_CUCACCUCUCCUUAU__UUUUAUAUGCG_____________ ((((.(((((.(((..........))).)))))...(((((.........)))))..........)))).............................................. (-10.29 = -10.64 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:38 2011