| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,219,212 – 13,219,321 |
| Length | 109 |
| Max. P | 0.563110 |
| Location | 13,219,212 – 13,219,321 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.60 |
| Shannon entropy | 0.30171 |
| G+C content | 0.32120 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -14.50 |
| Energy contribution | -15.50 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563110 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13219212 109 + 21146708 AUUUGUAUGAAUUACACCUUGUAGCGAAAUGUAAAUGCGCAAUUUGUUUUCUUACAGGGAAAUA-UCCUUUAACAAGAGAUAAGUAGACAAUGUCCCUUCAAUAUUGUCG-- ...((((.....))))((((((((((((.(((......))).))))).....)))))))...((-(((((....))).))))....((((((((.......)))))))).-- ( -23.10, z-score = -1.89, R) >droEre2.scaffold_4845 9955144 111 - 22589142 AUUUAUGUAAAGAACACUUUGUAACAAAAUGCAAAUACGCCAUUUGUUCUGUUACAAGAAAAGAAUCCCUUAACGAUGGAUAAGACGACAAUAUCCAUUCAAUAUUGUCCU- .................(((((((((....((((((.....))))))..)))))))))......((((.........)))).....((((((((.......))))))))..- ( -19.40, z-score = -1.87, R) >droYak2.chr2R 2885529 110 - 21139217 ACCUAUGUAAAGAAUACUUUGUAACAAAAUGUAAAUACGCCAUUUGUCGUGUUACAACAAGAGA-UCCUUUAACGAGAGAUAAGACG-CAAUAUCCAUUCAAUAUUGUCCUU ..((...(((((.((..(((((.......(((((.((((.(....).))))))))))))))..)-).)))))...)).........(-((((((.......))))))).... ( -14.81, z-score = -0.20, R) >droSec1.super_1 10720215 109 + 14215200 AUUUAUAUGAAUUACACCUUGAAGCGAAAUGUAAAUGCGCAAUUUGUUUUCUUACAGGGAAAUA-UCCUUUAACAAGAGAUAAGAUGACAAUAUCCCUUCAAUAUUGUCG-- ................((((((((((((.(((......))).))))))).....)))))...((-(((((....))).))))....((((((((.......)))))))).-- ( -20.10, z-score = -1.52, R) >consensus AUUUAUAUAAAGAACACCUUGUAACAAAAUGUAAAUACGCAAUUUGUUUUCUUACAAGAAAAGA_UCCUUUAACAAGAGAUAAGACGACAAUAUCCAUUCAAUAUUGUCC__ .(((((..........(((((((((((((..(((((.....))))))))))))))))))........((((....)))))))))..((((((((.......))))))))... (-14.50 = -15.50 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:37 2011