| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,206,719 – 13,206,818 |
| Length | 99 |
| Max. P | 0.512976 |
| Location | 13,206,719 – 13,206,818 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.78 |
| Shannon entropy | 0.46452 |
| G+C content | 0.55977 |
| Mean single sequence MFE | -34.10 |
| Consensus MFE | -20.48 |
| Energy contribution | -21.26 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13206719 99 + 21146708 -----GUGUGGCGAGUUCAUUAGAUGGCUUAGCCGAGCUU-GGUGGAAAGUUGAACGGAAAAGCGGGCGGAAAA------GCGAAACAGGGGC---CCCCAAAGAGUUGCCACU -----..(((((((.(((........((((..((((((((-......)))))...)))..))))(((.((....------.(......)...)---))))...)))))))))). ( -30.30, z-score = -0.33, R) >droAna3.scaffold_13266 6464158 110 - 19884421 GAGUGGAGAACCGAGUUCAUUAGAAGGCUUAGCCUGGUCA-GAGAGAGAAAGGGGUGGAGAAA---GUGGAAAGUCGCGGGUGGGGAUGUGGCAAGUGGCCAUGAGUUGCCACA ..((((....(((..(((...((....))((.(((..((.-......))..))).))..))).---.)))....))))..((((.((((((((.....)))))..))).)))). ( -28.60, z-score = -0.74, R) >droEre2.scaffold_4845 9942044 106 - 22589142 -----GUGUGGCGAGUUCAUUAGAUGGCUUAGCCGAGCUUCGGGGGGAAAGCGCGCGGAAAAGCGUGCGGAAAACAGGGCAGGGAACAGGAGC---CCCCAAAGAGUUGCCACU -----..(((((((.(((....((.(((((....)))))))(((((....((((((......)))))).............(....).....)---))))...)))))))))). ( -41.60, z-score = -1.94, R) >droYak2.chr2R 2873005 108 - 21139217 -----GUGUGGCGAGUUCAUUAGAUGGCUUAGCCGAGCUUGCGGGGAAAG-UGGGCGGAAAAGCGUGCGGAAAACCGUGGGCCGAGUGGGGGAGAACCCCAAAGAGUUGCCACU -----..(((((((.(((.......(((...)))(.(((..(((.....(-((.((......)).)))......)))..))))...(((((.....)))))..)))))))))). ( -43.50, z-score = -2.45, R) >droSec1.super_1 10707818 99 + 14215200 -----GUGUGGCGAGUUCAUUAGAUGGCUUAGCCGAGCUU-GGUGGAAAGUUGAACGGAAAAGCGGGCGGAAAA------GCGAAACAGGGGC---CCCCAAAGAGUUGCCACU -----..(((((((.(((........((((..((((((((-......)))))...)))..))))(((.((....------.(......)...)---))))...)))))))))). ( -30.30, z-score = -0.33, R) >droSim1.chr2R 11936849 99 + 19596830 -----GUGUGGCGAGUUCAUUAGAUGGCUUAGCCGAGCUU-GGUGGAAAGUUGAACGGAAAAGCGGGCGGAAAA------GCGAAAAAGGGGC---CCCCAAAGAGUUGCCACU -----..(((((((.(((........((((..((((((((-......)))))...)))..))))(((.((....------.(......)...)---))))...)))))))))). ( -30.30, z-score = -0.55, R) >consensus _____GUGUGGCGAGUUCAUUAGAUGGCUUAGCCGAGCUU_GGGGGAAAGUUGAACGGAAAAGCGGGCGGAAAA______GCGAAACAGGGGC___CCCCAAAGAGUUGCCACU .......(((((((.(((........((((..(((..(..............)..)))..))))........................((((....))))...)))))))))). (-20.48 = -21.26 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:36 2011