| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,187,463 – 13,187,553 |
| Length | 90 |
| Max. P | 0.652045 |
| Location | 13,187,463 – 13,187,553 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 66.16 |
| Shannon entropy | 0.70085 |
| G+C content | 0.52422 |
| Mean single sequence MFE | -32.03 |
| Consensus MFE | -10.29 |
| Energy contribution | -10.95 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13187463 90 - 21146708 ACAAACUCGAUUUGUUGUUGCUACUGUGG---------CGGUGGCAACAAUUAAAAUUGCGCCACUGAGCGCCACUUUCGGC-CAUU---GGCAGUGGGGGCG .......(((((((((((((((((((...---------)))))))))))))..))))))(.((((((...(((......)))-....---..)))))).)... ( -33.40, z-score = -1.77, R) >droSim1.chr2R 11915360 90 - 19596830 ACAAACUCGAUUUGUUGUUGCUACUGUGG---------CGGCGGCAACAAUUAAAAUUGCGCCACUGAGCGCCACUUUCGGC-CAUU---GGCAGUGGGGGCG .......((((((((((((((..(((...---------)))..))))))))..))))))(.((((((...(((......)))-....---..)))))).)... ( -29.70, z-score = -0.38, R) >droSec1.super_1 10688617 90 - 14215200 ACAAACUCGAUUUGUUGUUGCUACUGUGG---------CGGCGGCAACAAUUAAAAUUGCGCCACUGAGCGCCACUUUCGGC-CAUU---GGCAGUGGGGGCG .......((((((((((((((..(((...---------)))..))))))))..))))))(.((((((...(((......)))-....---..)))))).)... ( -29.70, z-score = -0.38, R) >droYak2.chr2R 2853390 90 + 21139217 ACAAACUCGAUUUGUUGUUGCUACUGUGG---------CGGUGGCAACAAUUAAAAUUGCGCCACUGAGCGCCACUUUCGGC-CAUU---GGCAAUGGGGGCG .......(((((((((((((((((((...---------)))))))))))))..))))))((((.((.(..((((........-...)---)))..).)))))) ( -31.00, z-score = -1.39, R) >droEre2.scaffold_4845 9922603 90 + 22589142 ACAAACUCGAUUUGUUGUUGCUACUGUGG---------CGGCGGCAACAAUUAAAAUUGCGCCACUGAGCGCCACUUUCGGC-CAUU---GCCAAUGGGGGCG .....((((....(((((..(....)..)---------))))(((..((((....)))).)))..))))((((.(((..(((-....---)))...))))))) ( -27.70, z-score = -0.11, R) >droAna3.scaffold_13266 6445664 94 + 19884421 ACAAACUCGAUUUGUUGUUGCCACUGCUGCCGCUGCCACGGUGGCAACAAUUAAAAUUGCGCCACUGAGCGCCACUUUCGGCAUUUC---GCCCAUC------ ........((((((((((((((((((..((....))..)))))))))))))..)))))((((......)))).......(((.....---)))....------ ( -31.70, z-score = -2.71, R) >droPer1.super_10775 816 99 + 1009 GAAAACUCGAUUUGUUGCUGUGGCAGUGC----AGUGGCAGUGGCAACAAUUAAAAUAGCGCCACUGAGCGCCACUUCUGCUGCGGCCAGGGCGGCCAGGGCG .....(((.....((((((.((((...((----((..(.((((((....((....)).((........)))))))).)..)))).)))).))))))..))).. ( -39.00, z-score = -0.58, R) >droMoj3.scaffold_6496 7461018 78 + 26866924 ---------------------UGCAGCUGCUGCUAUGGCGUUGGCAACAAUUAAAAGUGCGCCACAGUGCGACACUCUUUUUAUUCGAGCGUCGGUGUG---- ---------------------.(((.(.((.(((.((((((((....)).........)))))).)))))(((.(((.........))).)))).))).---- ( -24.30, z-score = -0.21, R) >droVir3.scaffold_12875 7888595 89 - 20611582 GCAACUUGUUGUUGUUGCUGUUGCAGCUGCUGCUGUGGUGGUGGCAACAAUUAAAAGUGCGCCACAGUGCGACACUUUUUUAUUUCGAU-------------- .......((((((((..(..(..((((....))))..)..)..)))))))).((((((((((......))).)))))))..........-------------- ( -36.50, z-score = -3.29, R) >droGri2.scaffold_15245 1387285 93 - 18325388 GCAACUUGUUAUUGUUGUUGCUGCUUCUGUUACUGUGGCGGUGGCAACAAUUAAAAGUGCGCCACAGUGCGACACUUUUUU--CUGAGUCGCCUG-------- (((.(((...((((((((..(((((.(.......).)))))..))))))))...))))))....(((.(((((.(......--..).))))))))-------- ( -37.30, z-score = -4.13, R) >consensus ACAAACUCGAUUUGUUGUUGCUACUGUGG_________CGGUGGCAACAAUUAAAAUUGCGCCACUGAGCGCCACUUUCGGC_CAUU___GGCAGUGGGGGCG ...........(((((((((((.................))))))))))).......(((((......))).))............................. (-10.29 = -10.95 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:35 2011