| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,187,274 – 13,187,387 |
| Length | 113 |
| Max. P | 0.613227 |
| Location | 13,187,274 – 13,187,387 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 89.80 |
| Shannon entropy | 0.17675 |
| G+C content | 0.43238 |
| Mean single sequence MFE | -28.47 |
| Consensus MFE | -18.72 |
| Energy contribution | -21.96 |
| Covariance contribution | 3.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13187274 113 + 21146708 AGCACCCACAAAGACUCAGCGAUUUGCUCGGAAUUCCCAGCGGUUGAACUUCGGUUUUUUGCUCGCCUUUUGCCGUGCAAUUUUUAUGUUUCCGAGUUUUUGUUUUGUUGUUG ((((...((((((((((((((..((((.(((........(((((.((((....))))...)).)))......))).))))......))))...))))))))))..)))).... ( -30.54, z-score = -2.07, R) >droSim1.chr2R 11915177 108 + 19596830 AGCACCCACAAAGACUCAGCGAUUUGCUCGGAAUUCCCAGCGGUUGAACUUCGGUUUUUUCCUCGCCUUUUGCCGUGCAAUUUUUAUGUUUCUGAGUUUUUGUU--GUUG--- ((((...((((((((((((.(((((((.(((........(.((..((((....))))...)).)........))).)))).......))).)))))))))))))--))).--- ( -33.00, z-score = -3.55, R) >droSec1.super_1 10688437 105 + 14215200 AGCACCCACAAAGACUCAGCGAUUUGCUCGGAAUUCCCAGCGGUUGAACUUCGGUUUUUUCCUCGCCUUUUGCCGUGCAAUUUUUAUGUUUCUGAGUUUUUGUU--G------ .......((((((((((((.(((((((.(((........(.((..((((....))))...)).)........))).)))).......))).)))))))))))).--.------ ( -31.70, z-score = -3.42, R) >droYak2.chr2R 2853207 108 - 21139217 AGCACCCACAAAGACUCAGCGAUUUCCUGGGAAUUCCCAGCGGUUGAACUUCC-UUUUUUCCUCGCCUUUUGCCAUGCAAUUUUUAUGUUUCUGGGUUUUUUUUUUUUG---- ...(((((...((((...((((....(((((....))))).((..(((.....-.)))..))))))...((((...)))).......)))).)))))............---- ( -22.70, z-score = -1.00, R) >droEre2.scaffold_4845 9922416 112 - 22589142 AGCACCCACAAAGACUCAGCGAUUUCCUGGGAAUUCCCAGUGGUUGAACUUCCGUUUUUUCCUCGCCUUU-GCCGUGCAAUUUUUAUGUUUCUCAGUUUUUGGUUUUUUUUUA .((((...(((((.....((((....(((((....))))).((..((((....))))...))))))))))-)..))))................................... ( -24.40, z-score = -1.57, R) >consensus AGCACCCACAAAGACUCAGCGAUUUGCUCGGAAUUCCCAGCGGUUGAACUUCGGUUUUUUCCUCGCCUUUUGCCGUGCAAUUUUUAUGUUUCUGAGUUUUUGUUUUGUU____ .......((((((((((.((((...(((.((....)).)))((..((((....))))...))))))...((((...)))).............)))))))))).......... (-18.72 = -21.96 + 3.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:35 2011