| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,173,486 – 13,173,549 |
| Length | 63 |
| Max. P | 0.775957 |
| Location | 13,173,486 – 13,173,549 |
|---|---|
| Length | 63 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 83.16 |
| Shannon entropy | 0.31882 |
| G+C content | 0.41779 |
| Mean single sequence MFE | -15.53 |
| Consensus MFE | -10.08 |
| Energy contribution | -10.10 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775957 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13173486 63 - 21146708 UGUGUUUGAAAACUCAGGCAACAUGACGGAAGUAGUCCAUUGAUUGCUG--GACUCUUUUCGGGG (((((((((....)))))).)))...((((((.((((((........))--)))).))))))... ( -19.30, z-score = -2.10, R) >droEre2.scaffold_4845 9906919 63 + 22589142 UGUGUUUGAAAACUCAGCCAACAUGACGGAAGUAAUCCAUUGAUUGCUG--GACUAUUUUCGGCG .((((((((....)))...)))))..((((((((.((((........))--)).))))))))... ( -14.20, z-score = -1.10, R) >droYak2.chr2R 2839039 63 + 21139217 UGUGUUUGAAAACUCAGGCAACAUGACGGAAGUAAUCCAUUGAUUGCUG--GACUAUUUUCGACG (((((((((....)))))).)))...((((((((.((((........))--)).))))))))... ( -17.50, z-score = -2.70, R) >droSec1.super_1 10674748 60 - 14215200 UGUGUUUGAAAACUCAGGCAAAAUGACGGAAGUAAUCCAUUGAUUGCUG--GACUCUUUUCG--- ..(((((((....)))))))....((.(..(((((((....))))))).--..)))......--- ( -11.90, z-score = -0.74, R) >droSim1.chr2R 11901405 60 - 19596830 UGUGUUUGAAAACUCAGGCAACAUGACGGAAGUAAUCCAUUGAUUGCUG--GACUCUUUUCG--- (((((((((....)))))).))).((.(..(((((((....))))))).--..)))......--- ( -12.00, z-score = -0.53, R) >dp4.chr3 16737992 65 - 19779522 AGUGCCUCAAAACGAAGCCAAAUUGACGGAAGUAAUCCAUUGAUUGCUACCGACUAUUUUUCAUC .(.((.((.....)).))).......(((.(((((((....))))))).)))............. ( -13.40, z-score = -2.04, R) >droPer1.super_4 7130573 64 + 7162766 AGUGGCUU-CAACGAAGCCAAAUUGACGGAAGUAAUCCAUUGAUUGCUACCGACUAUUUUUCAUC ..((((((-(...)))))))......(((.(((((((....))))))).)))............. ( -20.40, z-score = -4.23, R) >consensus UGUGUUUGAAAACUCAGGCAACAUGACGGAAGUAAUCCAUUGAUUGCUG__GACUAUUUUCGA_G ..(((((((....)))))))..........(((((((....)))))))................. (-10.08 = -10.10 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:34 2011