| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,150,715 – 13,150,788 |
| Length | 73 |
| Max. P | 0.867640 |
| Location | 13,150,715 – 13,150,788 |
|---|---|
| Length | 73 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 80.73 |
| Shannon entropy | 0.34930 |
| G+C content | 0.39239 |
| Mean single sequence MFE | -19.17 |
| Consensus MFE | -9.78 |
| Energy contribution | -10.15 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13150715 73 + 21146708 GAGAUGUCAUUUGCCGAUA----ACAUCUU--CUAUAAAUACGUAGAUCUA-CGA---UGAUGGAAUCGCAAGUGCUGUCUAU .(((((.(((((((.(((.----.((((.(--((((......)))))....-...---.))))..)))))))))).))))).. ( -20.60, z-score = -2.62, R) >droSim1.chr2R 11879298 73 + 19596830 GAGAUGUCAUUUGCCGAUA----ACAUCUU--CUAUAAAUACGUAGAUUUA-CGA---UGAUGGAAUCGCAAGUGCUGCCUAU .((..(.(((((((.(((.----.((((.(--(..(((((......)))))-.))---.))))..)))))))))).)..)).. ( -16.80, z-score = -1.58, R) >droSec1.super_1 10652494 73 + 14215200 GAGAUGUCAUUUGCCGAUA----ACAUCUU--CUAUAAAUACGUAGAUUUA-CGA---UGAUGGAAUCGCAAGUGCUGUCUAU .(((((.(((((((.(((.----.((((.(--(..(((((......)))))-.))---.))))..)))))))))).))))).. ( -20.60, z-score = -2.78, R) >droYak2.chr2R 2815433 76 - 21139217 GAGAUGUCAUUUGCCGAUA----ACAUCUU--CUAUAAAUACGUAGAUCUA-CGACGAUGAUGGAAUCGCAAGUGCUGUCUAU .(((((.(((((((.(((.----.((((.(--((((......)))))((..-....)).))))..)))))))))).))))).. ( -21.00, z-score = -2.35, R) >droEre2.scaffold_4845 9884282 72 - 22589142 GAGAUGUCAUUUGCCGAUA----ACAUCUU--CUAUAAAUACGUAGAUCUA-CGA---UGAUGGAAUCGCAAGUGC-GUCUAU .(((((.(((((((.(((.----.((((.(--((((......)))))....-...---.))))..)))))))))))-)))).. ( -23.00, z-score = -3.47, R) >dp4.chr3 16720062 83 + 19779522 AAGAUGUCAUUCGGCGAUAGCAGACAUCCCAGCCAGCCAUCCAUCCAUCCGUCCAUAAAGUUAAAGUCGUAGAUAUCUUUUAU ((((((((...((((..((((.(((.........................)))......))))..))))..)))))))).... ( -13.01, z-score = -2.02, R) >consensus GAGAUGUCAUUUGCCGAUA____ACAUCUU__CUAUAAAUACGUAGAUCUA_CGA___UGAUGGAAUCGCAAGUGCUGUCUAU .(((((.((((((.((((......((((...............................))))..)))))))))).))))).. ( -9.78 = -10.15 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:29 2011