| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,142,645 – 13,142,736 |
| Length | 91 |
| Max. P | 0.779221 |
| Location | 13,142,645 – 13,142,736 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 66.01 |
| Shannon entropy | 0.58410 |
| G+C content | 0.36195 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -9.58 |
| Energy contribution | -9.94 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.779221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13142645 91 + 21146708 --------------UUAUAAUAAGUUAAUAGCCUGAGCU--AACGUGGUUUUUCGCACACUUAGAAGUGUGUCGAAAAUAAUUGUGUUCUUUAAGCAAACUAGUUUC --------------................((.((((..--((((..((((((((((((((....)))))).)))))..)))..)))).)))).))........... ( -20.50, z-score = -1.88, R) >droEre2.scaffold_4845 9876039 107 - 22589142 CCAAUUCUAAUAUCUAUUGCUAGACUAAUAUUUUUAGUUAUAACGUGGUUUUCCGCUCAGUUUCGAGUGUGUCGAAAUGAAUUGUGUCCCUCCAACAAUUUAGUAUU .................((((.((((((.....)))))).....((((....))))...(((((((.....)))))))(((((((.........))))))))))).. ( -18.70, z-score = -1.53, R) >droYak2.chr2R 2806818 101 - 21139217 ACUAAACUAGUAUUUGUAGUUAUUUU----UCACUGGAU-UAAUGUGGUUUUCCGCACAGUUAGGAGUGUGUCGAAACUGAUUGUGUUCCAGCAACAGUGCAGUAU- (((.(((((.......))))).....----.(((((...-...(((((....)))))..(((.((((..(((((....))).))..)))))))..))))).)))..- ( -21.10, z-score = 0.14, R) >droSec1.super_1 10641519 91 + 14215200 --------------UUAAAAUAAGUUAAUAGCCUGAGCU--AACGUGGUUUUCCGCACAGUUAGAAGUGUGUCCAAAUUAAUUGUGUUCCUUCAGCAAUCUAGUAUC --------------................((.((((..--(((((((....))))((((((((...((....))..)))))))))))..))))))........... ( -16.30, z-score = -1.32, R) >droSim1.chr2R 11870884 84 + 19596830 --------------UGGAAAUGAGUUAAUAGCCUGAGCU--AACGUGGUUUUCCGCACACUUAGAAGUGUGUCCAAAUUAAUUGUGUUCCUUCAGCAAUC------- --------------................((.((((..--((((..(((....(((((((....))))))).......)))..))))..))))))....------- ( -18.90, z-score = -1.25, R) >consensus ______________UGAAAAUAAGUUAAUAGCCUGAGCU__AACGUGGUUUUCCGCACAGUUAGAAGUGUGUCGAAAUUAAUUGUGUUCCUUCAGCAAUCUAGUAU_ ....................................(((..((((..((((((.(((((........))))).)))...)))..)))).....)))........... ( -9.58 = -9.94 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:28 2011