| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,130,987 – 13,131,112 |
| Length | 125 |
| Max. P | 0.990352 |
| Location | 13,130,987 – 13,131,112 |
|---|---|
| Length | 125 |
| Sequences | 5 |
| Columns | 128 |
| Reading direction | forward |
| Mean pairwise identity | 65.61 |
| Shannon entropy | 0.61283 |
| G+C content | 0.58929 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -14.15 |
| Energy contribution | -16.16 |
| Covariance contribution | 2.01 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.990352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13130987 125 + 21146708 CCAGUCCACCGAUACCCCC-AUCCCCAACCCGAUUCGCAGCCCGAGUGCAACUGUAUUCCGCUGUUUGCCAGCCCACUCGCAUGUUGCAUCCGCUGGCGCAUUGACUUUCAUGUUGCGCCCCCCCG-- ...................-..................(((..(..(((((((((.....((((.....))))......))).))))))..))))((((((.((.....))...))))))......-- ( -27.90, z-score = -1.45, R) >droYak2.chr2R 2794896 108 - 21139217 ----------------CCA-GUCCCCAUCCACAUCCCCAUCCCGACUGCAACUGUAUUCCGCUGGUUUCCAGCACACUCGCAUGUUGCAUCCGCUGGCGCAUUGACUUUCAUGUUGCGCCCCCCG--- ----------------...-......................((..(((((((((.....(((((...)))))......))).))))))..))..((((((.((.....))...)))))).....--- ( -27.90, z-score = -2.64, R) >droSec1.super_1 10629506 127 + 14215200 CCAGUCCACCGAUACCCCC-AUCCCCAUCACCAUUCGCAGCCCGACUGCAACUGUAUUCCGCUGUUUGCCAGCCCACUCGCAUGUUGCAUCCGCUGGCGCAUUGACUUUCAUGUUGCGCCUCCCCCCG ...................-..................(((..((.(((((((((.....((((.....))))......))).)))))))).)))((((((.((.....))...))))))........ ( -27.70, z-score = -1.81, R) >droSim1.chr2R 11858599 127 + 19596830 CCAGUCCACCGAUACCCCC-AUCCCCAUCCUCAUUCGCAGCCCGACUGCAACUGUAUUCCGCUGUUUGCCAGCCCACUCGCAUGUUGCAUCCGCUGGCGCAUUGACUUUCAUGUUGCGCCUCCCCCCG ...................-..................(((..((.(((((((((.....((((.....))))......))).)))))))).)))((((((.((.....))...))))))........ ( -27.70, z-score = -1.91, R) >droWil1.scaffold_181009 2890724 99 - 3585778 -----CCACUAAAACCCCCCGUUUCCAUCGCC-CCCGGCUCCUCAUAAUAACUUUAAACUGA--------AAUGCAUCCGUUGUCAGAGUGUGUGUGUGUGUUAGCCCGCGCG--------------- -----.((((...................(((-...)))...................((((--------...((....))..)))))))).(((((.((....)).))))).--------------- ( -17.20, z-score = -0.92, R) >consensus CCAGUCCACCGAUACCCCC_AUCCCCAUCCCCAUUCGCAGCCCGACUGCAACUGUAUUCCGCUGUUUGCCAGCCCACUCGCAUGUUGCAUCCGCUGGCGCAUUGACUUUCAUGUUGCGCCCCCCC___ .....................................((((..((.(((((((((.....((((.....))))......))).)))))))).))))(((((.((.....))...)))))......... (-14.15 = -16.16 + 2.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:25 2011