| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,118,216 – 13,118,339 |
| Length | 123 |
| Max. P | 0.562428 |
| Location | 13,118,216 – 13,118,339 |
|---|---|
| Length | 123 |
| Sequences | 6 |
| Columns | 123 |
| Reading direction | reverse |
| Mean pairwise identity | 76.73 |
| Shannon entropy | 0.45103 |
| G+C content | 0.45757 |
| Mean single sequence MFE | -33.19 |
| Consensus MFE | -17.99 |
| Energy contribution | -19.93 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13118216 123 - 21146708 GUCCUCGCAUUUCGUUUGGAAUAUUUUCGUUUCGCUUCUUAAUGGGAUUACGGGAAUUAAUCUCCAUAGACAGCAGACUGGUAAACCGUAAACCGAUCUGCUGUGACAGCCAAGAGCCAGUGA ....((((.........(((((......)))))(((.(((.(((((((((.......))))).))))..((((((((.((((.........)))).)))))))).......))))))..)))) ( -31.80, z-score = -0.73, R) >droSim1.chr2R 11850631 123 - 19596830 GUCCUCGUAUUUCGUUUGGAAUAUUUUCGUUUCGCUUCUUAAUGGGAUUACGGGGAUUAAUCUCCAUAGACAGCAGACUGGUAAACCGUAAACCGAUCUGCUGUGACAGCCAAGAGCCAGUGA ((((((((((..((((.((((..............)))).))))..).))))))))).......(((..((((((((.((((.........)))).))))))))....((.....))..))). ( -34.74, z-score = -1.34, R) >droSec1.super_1 10621864 123 - 14215200 GUCCUCGCAUUUCGUUUGGAAUAUUUUCGUUUCGCUUCUUAAUGGGAUUACGGGGAUUAAUCUCCAUAGACAGCAGACUGGUAAACCGUAAACCGAUCUGCUGUGACAGCCAAGAGCCAGUGA .(((..((.....))..)))...........(((((.(((..(((......(((((....)))))....((((((((.((((.........)))).)))))))).....))).)))..))))) ( -32.60, z-score = -0.64, R) >droYak2.chr2R 2787001 123 + 21139217 UUUCUCGCAUUUCCUUUGGCAUAUGUUCGCCUCCCUUCUUAAUGGGAUUACGGGGAUUAAUCUCCAUAGACAGCAGACUGGUAAACCGUAAACCGAUCUGCUGUGACAGCCAAGAGGCAGUGC ......(((((.((((((((...........((((........))))....(((((....)))))....((((((((.((((.........)))).))))))))....))).))))).))))) ( -43.80, z-score = -3.52, R) >droEre2.scaffold_4845 9854340 117 + 22589142 ------GCAUUUCCUGGGGAAUAUUUUCGAUACCCUUCUUAAUGGGAUUACGGGGAUUAAUCUCCAUGGACAGCAGACUGGUAAACCGUAAACCGAUCUGCUGUGACAGCCGAGAGUCAGCGA ------((...(((((((((..(((..((...(((........)))....))..)))...)))))).)))(((((((.((((.........)))).)))))))((((........)))))).. ( -40.90, z-score = -2.93, R) >droAna3.scaffold_13266 6384475 96 + 19884421 -------------------------UUAGUUAAGAAUC--AAAUCCAUUUCCUCGAUUAAUCGCCUGGGACGACGGAAGGAAAACCCCUAAACCGAUCUUCAGUGACUGACAGCAGAACACAA -------------------------(((((((.(((..--.........(((((((....)))...)))).(((((.(((......)))...))).)))))..)))))))............. ( -15.30, z-score = 0.68, R) >consensus GUCCUCGCAUUUCGUUUGGAAUAUUUUCGUUUCGCUUCUUAAUGGGAUUACGGGGAUUAAUCUCCAUAGACAGCAGACUGGUAAACCGUAAACCGAUCUGCUGUGACAGCCAAGAGCCAGUGA ............................(((((..................(((((....)))))....((((((((.((((.........)))).)))))))).........)))))..... (-17.99 = -19.93 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:24 2011