| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,106,302 – 13,106,412 |
| Length | 110 |
| Max. P | 0.530687 |
| Location | 13,106,302 – 13,106,412 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 86.93 |
| Shannon entropy | 0.25206 |
| G+C content | 0.40619 |
| Mean single sequence MFE | -26.37 |
| Consensus MFE | -14.52 |
| Energy contribution | -14.22 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13106302 110 - 21146708 CUCCGAAAUCACUUGAUAUUCGACACU-AAAACUGCGCCAAAGGCCAAACACAAUAUUUGCGAGCAGCAUGUGAGCCAGUUGCCGUAAAC-AUUUUAGUGUUCGCAAUUAAU ...(((((((....))).))))(((((-((((.((.(((...))))).........((((((.(((((.((.....))))))))))))).-.)))))))))........... ( -27.10, z-score = -2.04, R) >droSim1.chr2R 11838634 110 - 19596830 CUCCGAAAUCACUUGAUAUUCGACACU-AAAACUGCGCCAAAGGCCAAACACAAUAUUUGCGAGCAGCAUGUGAGCCAGUUGCCGUAAAC-AUUUUAGUGUCCGCAAUUAAU ....((((((....))).)))((((((-((((.((.(((...))))).........((((((.(((((.((.....))))))))))))).-.)))))))))).......... ( -28.80, z-score = -2.75, R) >droSec1.super_1 10609847 110 - 14215200 CUCCGAAAUCACUUGAUAUUCGACACU-AAAACUGCGCCAAAGGCCAAACACAAUAUUUGCGAGCAGCAUGUGAGCCAGUUGCCGUAAAC-AUUUUAGUGUCCGCAAUUAAU ....((((((....))).)))((((((-((((.((.(((...))))).........((((((.(((((.((.....))))))))))))).-.)))))))))).......... ( -28.80, z-score = -2.75, R) >droYak2.chr2R 2774824 110 + 21139217 CUCCGAAAUCACUUGAUAUUCGACACU-AAAACUUCGCCAAAGGCCAAACACAAUAUUUGUGGGCACCAUGCGAGGCAGUUGCCGUAAAC-AUUUUAGUGUCCGCAAUUAAU ....((((((....))).)))((((((-((((..((((.....(((...((((.....))))))).....))))(((....)))......-.)))))))))).......... ( -30.60, z-score = -3.07, R) >droEre2.scaffold_4845 9842073 109 + 22589142 CUCCCAAAUCACUUGAUAUUCGACACU-AAAACUGCGCCAAAGGCCAAACAUAAUAUUUACG-GCACCAUGUGAGCCAGUUGCCGUAAAC-AUUUUAGUGACCGCAAUUAAU .......(((....)))......((((-((((.((.(((...))))).........((((((-(((...((.....))..))))))))).-.))))))))............ ( -22.60, z-score = -1.90, R) >droAna3.scaffold_13266 6373006 111 + 19884421 CUUAAAAUUCACCUGUUAUGUGACACUAAAAACUUAGCCAAAGGCCAAA-AAAAUAAAUAUUCAUAUGAGGCAGUUUCGUUGCCGUAAACAAUUUUAGUGUCUGCCAUUAAU .....................((((((((((.....(((...)))....-...................(((((.....)))))........)))))))))).......... ( -20.30, z-score = -1.48, R) >consensus CUCCGAAAUCACUUGAUAUUCGACACU_AAAACUGCGCCAAAGGCCAAACACAAUAUUUGCGAGCAGCAUGUGAGCCAGUUGCCGUAAAC_AUUUUAGUGUCCGCAAUUAAU .....................((((((.(((.....(((...)))...........((((((.(((...((.....))..)))))))))...))).)))))).......... (-14.52 = -14.22 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:20 2011