Locus 4445

Sequence ID dm3.chr2R
Location 13,095,061 – 13,095,129
Length 68
Max. P 0.672445
window6086

overview

Window 6

Location 13,095,061 – 13,095,129
Length 68
Sequences 5
Columns 68
Reading direction reverse
Mean pairwise identity 90.59
Shannon entropy 0.16328
G+C content 0.43529
Mean single sequence MFE -15.14
Consensus MFE -15.58
Energy contribution -14.62
Covariance contribution -0.96
Combinations/Pair 1.25
Mean z-score -0.53
Structure conservation index 1.03
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.672445
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 13095061 68 - 21146708
GUGAGCUUUUGCAAACUUCGGGCAUCGCUGCAGAUUUAAAGGGGUUUACCAUUUAAGGGCAUAUUAAG
((((((....))...(....)...))))(((...((((((.((.....)).)))))).)))....... ( -14.30, z-score =  -0.49, R)
>droEre2.scaffold_4845 9830699 68 + 22589142
GUGAGCUUUUGGGAACUUCGGGCUUCGCUGCAGAUUUAAAGGGUUUUACCGUUUAGGGGCAUAUGGAG
((((((((..(....)...)))).))))(((...((((((.((.....)).)))))).)))....... ( -17.10, z-score =  -0.62, R)
>droYak2.chr2R 2759793 68 + 21139217
GUGAGCUUUUGGGAACUUCGGGCUUCGCUGCAGAUUUAAGGGGUUUUACCGUUUAAGGGCAUAUUAAG
((((((((..(....)...)))).))))(((...((((((.((.....)).)))))).)))....... ( -17.20, z-score =  -1.02, R)
>droSec1.super_1 10598577 68 - 14215200
GAGAGCUUUUGGAAACUUCGGGUUUCUCUGCAGAUUUAAAGGGUUUCACCAUUUAAGGGUAUAUUAAG
((((.((((((((..((.((((....)))).)).)))))))).))))(((.......)))........ ( -13.30, z-score =  -0.39, R)
>droSim1.chr2R 11825943 68 - 19596830
GUGAGCUUUUGCAAACUUCGGGCUUCGCUGCAGAUUUAAAGGGUUUCACCAUUUAAGGGCAUAUUAAG
((((((....))...(....)...))))(((...((((((((......)).)))))).)))....... ( -13.80, z-score =  -0.13, R)
>consensus
GUGAGCUUUUGGAAACUUCGGGCUUCGCUGCAGAUUUAAAGGGUUUUACCAUUUAAGGGCAUAUUAAG
((((((((..(....)...)))).))))(((...((((((.((.....)).)))))).)))....... (-15.58 = -14.62 +  -0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:16 2011