| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,073,086 – 13,073,150 |
| Length | 64 |
| Max. P | 0.692995 |
| Location | 13,073,086 – 13,073,150 |
|---|---|
| Length | 64 |
| Sequences | 7 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 77.78 |
| Shannon entropy | 0.42444 |
| G+C content | 0.44439 |
| Mean single sequence MFE | -14.64 |
| Consensus MFE | -11.46 |
| Energy contribution | -12.20 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.692995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13073086 64 + 21146708 UAGUUUCUUUCCGUGUAAGCAGCUGA--AGACAGCG--CAUAACUUGUCCGCCAA--GGUGGACCAAAUU- ..................((.((((.--...)))))--).......((((((...--.))))))......- ( -16.90, z-score = -1.58, R) >droSec1.super_1 10577148 64 + 14215200 UAGUUUCUUUCCGUGUAAGCAGCUGA--AGACAGCG--CAUAACUUGUCCGCCAA--GGUGGACCAAAUU- ..................((.((((.--...)))))--).......((((((...--.))))))......- ( -16.90, z-score = -1.58, R) >droYak2.chr2R 2737218 64 - 21139217 UAGUUUCUCUCUGUGUAAGCAGCUGA--AGACAGCG--CAUAACUUGUCCGCCAA--GGUGGACCAAAUU- ..................((.((((.--...)))))--).......((((((...--.))))))......- ( -16.90, z-score = -1.20, R) >droEre2.scaffold_4845 9808956 64 - 22589142 UAGUUUCUUUCCGUGUAAACAGCUGA--AGACGGCG--CAUAACUUGUCCGCCAA--GGUGGACCAAAUU- ..(((((.......).)))).((((.--...)))).--........((((((...--.))))))......- ( -14.80, z-score = -0.64, R) >droAna3.scaffold_13266 6343905 61 - 19884421 ----UUUUUUUUCUCUCUGCAGCCAA--AGACAGCG--CAUAACUUGUUCGCCUA--GGUGGACUAAAAUU ----.............(((.((...--.....)))--))......((((((...--.))))))....... ( -10.50, z-score = -0.04, R) >droWil1.scaffold_180704 30590 70 + 50459 CAAUUAUAUUUGGUGAAAAUAGCGUAUUAUAUAACGUCCAUAGUUUACUCAACAAACGGUGGAGCAGGUG- ......((((((.(.......((((........))))((((.((((.......)))).))))).))))))- ( -9.60, z-score = 0.36, R) >droSim1.chr2R 11801932 64 + 19596830 UAGUUUCUUUCCGUGUAAGCAGCUGA--AGACAGCG--CAUAACUUGUCCGCCAA--GGUGGACCAAAUU- ..................((.((((.--...)))))--).......((((((...--.))))))......- ( -16.90, z-score = -1.58, R) >consensus UAGUUUCUUUCCGUGUAAGCAGCUGA__AGACAGCG__CAUAACUUGUCCGCCAA__GGUGGACCAAAUU_ .....................((((......))))...........(((((((....)))))))....... (-11.46 = -12.20 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:12 2011