| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,069,772 – 13,069,907 |
| Length | 135 |
| Max. P | 0.837765 |
| Location | 13,069,772 – 13,069,907 |
|---|---|
| Length | 135 |
| Sequences | 4 |
| Columns | 161 |
| Reading direction | forward |
| Mean pairwise identity | 53.72 |
| Shannon entropy | 0.73513 |
| G+C content | 0.37975 |
| Mean single sequence MFE | -34.97 |
| Consensus MFE | -11.31 |
| Energy contribution | -15.38 |
| Covariance contribution | 4.06 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837765 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13069772 135 + 21146708 --UGAGCAAGGUUCCCCUCAUGGGCCACCAA--------UGAA----UAGUUGUGAUGCCUCACUGCUUUGACAUCAUUGUAAUGGGG----UUCGCAAAUAAGAAUCAUAUAUACACUAUUUAACUUCAUUUAUUUCUUCAUAUACAAAAAU-------- --((((...(((..(((....)))..)))..--------((((----(((((((((.((((((.(((..((....))..))).)))))----))))))..................))))))))..)))).......................-------- ( -30.16, z-score = -1.42, R) >droYak2.chr3L 23835778 141 + 24197627 AAUCGCAGCAGUUCCUCUCAUGGGACACCAAAA-UGUUGUGAG-----CAAAGCAAAUUUCUGCUUUUGGGGCCUUGCUGCAGCGAUAA----UGACAA--AACCAGGUUUAAUUCACUAUUUAAAUACUGAUCUUUAUUUGCACUGAACAGU-------- ..(((((((((((((.(((((..((((......-)))))))))-----.((((((......)))))).)))))..)))))).(((((((----.((...--...(((((((((........)))))).))).)).))).))))...)).....-------- ( -31.90, z-score = 0.00, R) >dp4.Unknown_singleton_2077 33921 140 + 34350 --UAAACGCGGUUCCCUCCAUGGGCCACCAAAAAUAUUGUGAAAUCCUCGAUACGAGAUUUCAAUG-UUGAGCAGAAAUGCUCUGGGGAAUCUUUGCGUUUAAUAAUGUACUACACGAUAUAGACCAUUCGAGAUUUAUUCAU------------------ --(((((((((((((((...(((....)))..(((((..(((((((.(((...)))))))))))))-))(((((....))))).))))))))...))))))).............(((..........)))............------------------ ( -38.70, z-score = -2.77, R) >droPer1.super_641 10971 158 + 12107 --UAAACGCGGUUCCCCUCAUGGGCCACCAAAAAUGUUGUGAAAUCCUCGAUACGAGCUUUCAAUG-UUGAGCAGAAAUGCUCUGGGGAAUCUUUGCGUUUAAUAAUGUACUACACGAUAUAGACAAUUCGAGAUUUAUUAAUUUAUACUUCAAUCAACUU --(((((((((((((((...(((....))).........(((((..((((...)))).)))))...-..(((((....))))).))))))))...)))))))....(((.(((.......))))))......((..(((......)))..))......... ( -39.10, z-score = -2.35, R) >consensus __UAAACGCGGUUCCCCUCAUGGGCCACCAAAA_UGUUGUGAA____UCGAUACGAGAUUUCAAUG_UUGAGCAGAAAUGCACUGGGGA___UUUGCAAUUAAUAAUGUACUACACAAUAUAGAAAAUCCGAGAUUUAUUCAUAUA_AA_A_U________ ..(((((((((.(((((...(((....))).......................................(((((....))))).)))))....)))))))))........................................................... (-11.31 = -15.38 + 4.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:11 2011