| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,099,231 – 3,099,329 |
| Length | 98 |
| Max. P | 0.808746 |
| Location | 3,099,231 – 3,099,329 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.40 |
| Shannon entropy | 0.39072 |
| G+C content | 0.33329 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -12.64 |
| Energy contribution | -12.96 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3099231 98 + 23011544 ----------------------UUUUCUUUUAAAUUUAUCUGGAAUUCCCUCUUACUUAACCUUAAGCUGUUUGCCCCGUUUGUCACAAAAAAGGUGAUGGCUUAUCAUCUAAGAUAACC ----------------------.............((((((((....))..............(((((((.(..((...((((...))))...))..)))))))).......)))))).. ( -15.70, z-score = -0.95, R) >droEre2.scaffold_4929 3142224 118 + 26641161 UCACUAUAGCCACAGUCAGACUCUUUCAUUUAUAUUUAUCUUGAAUUUCCUCUAAUUUAACCUUAAGUUGUUUGCCUCUUUUGUCACCGAAA-GGUGAUGGCUUAUCUUCUAAGAUAAC- .......((((..((.(((((............(((((..(((((((......)))))))...))))).))))).)).....((((((....-))))))))))(((((....)))))..- ( -24.62, z-score = -2.77, R) >droYak2.chr2L 3091042 118 + 22324452 AUAUUAUAUUUAUAACCAAACUCUUUCACUUAUAUUUAUCUUGCAUUUUCUCCUAUUUAACCAUAAGUUGUUUGCCCCUUUUGUCACCAAAA-GGUGAUGGCUUAUCAGUCAAGAUAAC- ...................................((((((((................((.((((((..((....(((((((....)))))-)).))..))))))..)))))))))).- ( -18.29, z-score = -1.84, R) >droSec1.super_5 1251400 114 + 5866729 ----UUCAGCCAUUGCCAGGCUCUUUUAUUUAUAUUUAUCUGGAAUUUCCUCUUAUUUAACAUAAAGUUGUUUGCCCCCUUUGUCACCAAAA-GGUGAUGGCUUAUCAUCUAAGAUAAC- ----...((((((..((.(((.......(((((.((.....(((......))).....)).))))).......)))...((((....)))).-))..))))))((((......))))..- ( -23.94, z-score = -1.88, R) >droSim1.chr2L 3037640 114 + 22036055 ----UUUAGCCAUUGCCAGGUUCUUUUAUUUAUAUUUAUCUGGAAUUUUCUCUUAUUUAACAUUAAGUUGUUUGCCCCCUUUGUCACCAAAA-GGUGAUGGCUUAUCAUCUAAGAUAAC- ----...((((((..((.(((......(((((...(((...(((......)))....)))...))))).....)))...((((....)))).-))..))))))((((......))))..- ( -21.70, z-score = -1.34, R) >consensus ____UAUAGCCAUAGCCAGACUCUUUCAUUUAUAUUUAUCUGGAAUUUCCUCUUAUUUAACCUUAAGUUGUUUGCCCCCUUUGUCACCAAAA_GGUGAUGGCUUAUCAUCUAAGAUAAC_ ...................................(((((((((.............((((.....))))...(((......((((((.....)))))))))......))).)))))).. (-12.64 = -12.96 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:03 2011