| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,048,143 – 13,048,248 |
| Length | 105 |
| Max. P | 0.678959 |
| Location | 13,048,143 – 13,048,248 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.66 |
| Shannon entropy | 0.55051 |
| G+C content | 0.53246 |
| Mean single sequence MFE | -27.99 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.51 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13048143 105 + 21146708 CGGGAGCAUAGUUGUAGCCCGACAGGUGGGACACAUCGGCGUGGGCAACGGCCAAGAGGGCGACGGCGACAACCAGGAAUUUCUGCA-CAAUAAUUUACCAAAUUA---------- .((.......(((((.(((((...((((.....))))....)))))..((.((....)).))...)))))...((((....))))..-..........))......---------- ( -28.10, z-score = -0.21, R) >droSim1.chr2R 11782755 105 + 19596830 CGGGAGCAUAGUUGUAGCCCGACAGGUGGGACACAUCGGCGUGGGCAACGGCCAAGAGGGCGACGGCGACAACCAGGAAUUUCUGCA-AAUUAAUUUACCAAAUUA---------- .((.......(((((.(((((...((((.....))))....)))))..((.((....)).))...)))))...((((....))))..-..........))......---------- ( -28.10, z-score = -0.22, R) >droSec1.super_1 10558394 105 + 14215200 CGGGAGCAUAGUUGUAGCCCGACAGGUGGGACACAUCGGCGUGGGCAACGGCCAAGAGGGCGACGGCGACAACCAGGAAUUUCUGCA-AAUUAAUUUACCAAAUUA---------- .((.......(((((.(((((...((((.....))))....)))))..((.((....)).))...)))))...((((....))))..-..........))......---------- ( -28.10, z-score = -0.22, R) >droYak2.chr2R 2717814 104 - 21139217 CGGGAGCAUAGUUGUAGCCCGACAGAUGGGACACAUCGGCGUGGGCAACGGCCAAGAGGGCGACGGCGACAACCAGGAAUUUCUGCA-AAAUAAAUAAAAAAGUU----------- (((((.(...(((((.(((((...((((.....))))....)))))..((.((....)).))......)))))...)...)))))..-.................----------- ( -26.70, z-score = -0.68, R) >droEre2.scaffold_4845 9788651 102 - 22589142 ---GAGCAUAGUUGUAGCCCGACAGAUGGGACACAUCGGCGUGGGCAACGGCCAGGAGGGCGACGGCGACAACCAGGAAUUUCUGCA-AAAUAAUUCACCAAGUUA---------- ---.(((...(((((.((((..(.((((.....))))(((((.....)).))).)..))))....)))))......(((((......-....))))).....))).---------- ( -28.40, z-score = -0.60, R) >droAna3.scaffold_13266 6325826 104 - 19884421 CGGGAGCGUAGUUGUAGCCGGACAGGUGGGAGACAUCGGCGUGGGCAACAGCCAAGAGGGCAACGGCGACAACCAGGAAUUUCUACAACAAAAAAGGAUAAUCA------------ .((((.(.(.(((((.((((....((((.....))))(((...(....).)))..........)))).))))).).)...))))....................------------ ( -26.80, z-score = -1.19, R) >dp4.chr3 16645161 109 + 19779522 CGGGGGCGUAGUUGUAGCCGGACAGAUGGGAGACAUCGGCAUGGGCAACAGCCAGGACGGCGAGGACGACGGCGAGCAGUUUCUGCACGGAAAAAUCACAAAAGUUACG------- ..(..((((.(((((.((((..(.((((.....))))(((...(....).))).)..))))....))))).))((....(((((....)))))..))......))..).------- ( -34.90, z-score = -2.34, R) >droPer1.super_4 7036878 109 - 7162766 CGGGGGCGUAGUUGUAGCCGGACAGAUGGGAGACAUCGGCAUGGGCCACAGCCAGGACGGCGAGGACGACGGCGAGCAGUUUCUGCACGGAAAAAUCACAAAAGUUACG------- ..(..((((.(((((.((((..(.((((.....))))(((.((.....))))).)..))))....))))).))((....(((((....)))))..))......))..).------- ( -34.40, z-score = -1.58, R) >droWil1.scaffold_181009 2771057 85 - 3585778 ------------------CUGGAGCAUAGUUGUACUGUGCGUGGGCAACAGCCAAAAGGGCGAAGGCAACAACAAGGAAUUUCUGCA-AGAAAAACGAAAAUUA------------ ------------------.....((((((.....))))))((..((....(((.....)))....)).)).........((((....-.))))...........------------ ( -17.90, z-score = -0.19, R) >droVir3.scaffold_12875 7721957 106 + 20611582 CUGGGGCGUAAUUGUAGCCCGACAGGUGCGACACAUCGGCGUGGGCAACGGCCAAAAGGGCGAAGGCGACAACAAGAAGCUUCUGUAAG-CAAAAUUGAAAGGAUUA--------- ..(((((....((((.((((..((.((.(((....))))).))(((....)))....))))...(....).))))...)))))......-.................--------- ( -26.60, z-score = 0.66, R) >droMoj3.scaffold_6496 7270856 107 - 26866924 CCGGGGCGUAGUUGUAGCCGGACAGCUGCGACACAUCAGCGUGGGCAACGGCCAACAGGGCACAGACGACAACAAGAAGUUUCUGCAAGUCAAAAUCGAAAGGAUUA--------- ((.((.(((.((((((((......))))))))......((....)).))).))....))(((.((((..(.....)..)))).))).........((....))....--------- ( -29.50, z-score = -0.52, R) >droGri2.scaffold_15245 1236125 112 + 18325388 ----GGCAUAGUUGUAGCCCGACAGAUGGGAGACAUCGGCGUGGGCAACGGCCAAAAGGGCAACGGCGACAACAAGAAGCUUCUGCAAAUGAGAAUCAAAAUCGAAAAUAGAAUUA ----..(((.(((((.((((....((((.....))))(((((.....)).)))....)))).)))))...........((....))..)))......................... ( -26.40, z-score = -0.61, R) >consensus CGGGAGCAUAGUUGUAGCCCGACAGAUGGGACACAUCGGCGUGGGCAACGGCCAAGAGGGCGACGGCGACAACCAGGAAUUUCUGCA_AAAAAAAUCACAAAAUUA__________ ..........(((((.((((....((((.....))))(((.((.....)))))....))))....))))).............................................. (-18.28 = -18.51 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:10 2011