| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,029,601 – 13,029,699 |
| Length | 98 |
| Max. P | 0.774916 |
| Location | 13,029,601 – 13,029,699 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 79.28 |
| Shannon entropy | 0.42387 |
| G+C content | 0.44873 |
| Mean single sequence MFE | -19.57 |
| Consensus MFE | -12.79 |
| Energy contribution | -12.65 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774916 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13029601 98 + 21146708 --CCAACACAUGCACAUA-CAACCGAGUGACACACA--UGGGUAAUUCCCAACGUAAACACUUUGGGAAAGCAUGUCGCAAAGGCAUCAAUUACGGCAUCAGC- --((...((((((.....-...(((.(((...))).--)))....(((((((.((....)).))))))).)))))).((....)).........)).......- ( -23.70, z-score = -1.78, R) >droGri2.scaffold_15245 1221466 97 + 18325388 --CACACGUUUACUUCUA-CACAGCAGUGCGGCACU--UGGGUAAUUCUCAACGUAAACACUUUGGAA--ACAUGUCGCAAAGACAUCAAUUACAGCAUCGAUU --.....((((((..(..-(((....)))..)...(--((((.....))))).))))))....((...--.))((((.....)))).................. ( -17.20, z-score = -0.62, R) >droMoj3.scaffold_6496 7251471 92 - 26866924 --CACACGGUUACUUAUA-CAC-----UGCGGCACU--UGGGUAAUUCUCAACGUAAACACUUUGGGA--ACAUGUCGCAAAGACAUCAAUUACAGCAUCGAUU --....((((........-...-----((((((((.--...))..(((((((.((....)).))))))--)...))))))..(....).........))))... ( -14.90, z-score = -0.50, R) >droVir3.scaffold_12875 7701177 92 + 20611582 --CACACGGUUACUUAUA-CAC-----UGCGGCACU--UGGGUAAUUCUCAACGUAAACACUUUGGAA--GCAUGUCGCAAAGACAUCAAUUACAGCAUCGAUU --....((((........-...-----(((((((((--((((.....))))).))........((...--.)).))))))..(....).........))))... ( -13.20, z-score = 0.47, R) >droPer1.super_4 7024220 89 - 7162766 --CUCUCUGUUGCUCACA-CA---------GACACA--UGGGUAAUUCUCAACGUAAACACUUUGGGAGAACAUGUCGCAAAGACAUCAAUUACAGCAUCAGC- --....(((.((((....-((---------......--)).(((((((((((.((....)).)))))))...(((((.....)))))...)))))))).))).- ( -18.40, z-score = -1.19, R) >dp4.chr3 16623475 89 + 19779522 --CUCUCUGUUGCUCACA-CA---------GACACA--UGGGUAAUUCUCAACGUAAACACUUUGGGAGAACAUGUCGCAAAGACAUCAAUUACAGCAUCAGC- --....(((.((((....-((---------......--)).(((((((((((.((....)).)))))))...(((((.....)))))...)))))))).))).- ( -18.40, z-score = -1.19, R) >droAna3.scaffold_13266 6312034 99 - 19884421 ----CACACACACACAUAGCCAUAGAGUAACACACACAUGGGUAAUUCCCAACGUAAACACUUUGGGAAAGCAUGUCGCAAAGACAUCAAUUACGACAUCAGC- ----...............((((.(.((.....)).)))))(((((((((((.((....)).))))))).(.(((((.....))))))..)))).........- ( -18.90, z-score = -2.27, R) >droEre2.scaffold_4845 9775178 87 - 22589142 ------------CCCAUA-CA-CCGAGCGACACACA--UGGGUAAUUCCCAACGUAAACACUUUGGGAAAGCAUGUCGCAAAGACAUCAAUUACGGCAUCAGC- ------------......-..-(((.((((((.((.--...))..(((((((.((....)).)))))))....))))))...(....).....))).......- ( -19.90, z-score = -1.71, R) >droYak2.chr2R 2703826 99 - 21139217 CCAGCACAUACACCCAUA-CA-CCGAGUGACACACA--UGGGUAAUUCCCAACGUAAACACUUUGGGAAAGCAUGUCGCAAAGACAUCAAUUACGGCAUCAGC- ((.((......((((((.-..-....(((...))))--)))))..(((((((.((....)).))))))).))(((((.....))))).......)).......- ( -23.31, z-score = -2.17, R) >droSec1.super_1 10545063 97 + 14215200 --CCAACACAUGCACAUA-CA-CCGAGUGACACACA--UGGGUAAUUCCCAACGUAAACACUUUGGGAAAGCAUGUCGCAAAGACAUCAAUUACGGCAUCAGC- --.......((((.....-..-(((.(((...))).--)))(((((((((((.((....)).))))))).(.(((((.....))))))..)))).))))....- ( -23.70, z-score = -2.23, R) >droSim1.chr2R 11768246 97 + 19596830 --CCAACACAUGCACAUA-CA-CCGAGUGACACACA--UGGGUAAUUCCCAACGUAAACACUUUGGGAAAGCAUGUCGCAAAGACAUCAAUUACGGCAUCAGC- --.......((((.....-..-(((.(((...))).--)))(((((((((((.((....)).))))))).(.(((((.....))))))..)))).))))....- ( -23.70, z-score = -2.23, R) >consensus __CACACACAUACUCAUA_CA_CCGAGUGACACACA__UGGGUAAUUCCCAACGUAAACACUUUGGGAAAGCAUGUCGCAAAGACAUCAAUUACGGCAUCAGC_ .........................................(((((((((((.((....)).))))))....(((((.....)))))..))))).......... (-12.79 = -12.65 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:04 2011