| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,024,512 – 13,024,625 |
| Length | 113 |
| Max. P | 0.943173 |
| Location | 13,024,512 – 13,024,625 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 72.41 |
| Shannon entropy | 0.51950 |
| G+C content | 0.43487 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -13.35 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.943173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13024512 113 - 21146708 AAUAACUGAUGCAGCUGAAUGCACCGGGAAUUGUUUGAGUUAGACACUGACUCACAGUGAUGGCCACCAAACUAAAAUUACUGCGUUUUACACGACGCUAAGUUUCCCCCAAU .......(.((((......)))).)(((((..(((((.((((..(((((.....))))).))))...)))))..........(((((......))))).....)))))..... ( -26.60, z-score = -1.69, R) >droSim1.chr2R 11762930 111 - 19596830 AAAAACGGAUGCAGCUGAAUGCACCGGGAAUAGUUUGAGUUAGACACUGACUCACAGCGAUUGCCACCAAACUAAAAUUACUGCGUUUUACACGACGCUAAGUUUCCCCAG-- ......((.((((......))))))((((((((((((((((((...)))))))...((....))....))))))........(((((......))))).....)))))...-- ( -29.80, z-score = -2.91, R) >droSec1.super_1 10539862 111 - 14215200 AAAAACGGAUGCAGCUGAAUGCACCGGGAAUACUUUGAGUUAGACACUGACUCACAGUGAUUGCCACCAAACUAAAAUUACUGCGUUUUACACGACACUAAGUUUCCCCAG-- ......((.((((......))))))(((((.((((((((((((...))))))))((((((((.............))))))))................)))))))))...-- ( -29.42, z-score = -3.57, R) >droYak2.chr2R 2697985 111 + 21139217 AAUAACAGACGCAGCUGAAUGCACCGGGAAUAGUUUGAGUUAGACACUGACACACAGUGCGGGCCACCAAACAAUGUCUACUUUGUUUCACACGACAUUAAAUUUCCCCAG-- ..........(((......)))...(((((..(((((.((..(.(((((.....))))))..))...)))))((((((...............))))))....)))))...-- ( -24.96, z-score = -1.19, R) >droEre2.scaffold_4845 9769991 101 + 22589142 AAUUACGGACGCAGCUGAAUGCACCGGGAAUAGUUUGAGUUGGACACUGACUCACAG----------CAAACAAUAUUUACUUUGUUUCACACGACGCUAAAUUUCCCCAG-- ......((..(((......))).))(((((((((.(((((..(...)..)))))..(----------.((((((........))))))).......))))...)))))...-- ( -22.10, z-score = -1.56, R) >droAna3.scaffold_13266 6306299 91 + 19884421 ------AAAAACAAUCCCUGGAACUGGAAAUGCAAUGAGUCACGAAGUGG-----AG--------ACCACACUGUAAUUAGUUUGCUUUACAAGGU-CUAGACUUUCCCAU-- ------...........(((((.((..(((.((((..(((.(((..((((-----..--------.))))..))).)))...)))))))...)).)-))))..........-- ( -17.00, z-score = 0.26, R) >consensus AAUAACGGAUGCAGCUGAAUGCACCGGGAAUAGUUUGAGUUAGACACUGACUCACAGUGAU_GCCACCAAACUAAAAUUACUGCGUUUUACACGACGCUAAAUUUCCCCAG__ ..........(((......)))...(((((.....((((((((...))))))))..............................(((......))).......)))))..... (-13.35 = -13.13 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:02 2011