| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,001,004 – 13,001,105 |
| Length | 101 |
| Max. P | 0.869106 |
| Location | 13,001,004 – 13,001,105 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.04 |
| Shannon entropy | 0.54419 |
| G+C content | 0.43198 |
| Mean single sequence MFE | -20.03 |
| Consensus MFE | -12.20 |
| Energy contribution | -12.08 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13001004 101 + 21146708 CAUCGACAGCUUCCUAGUUCAGCCCAUCCAAAGACUGACCAGAUAUCCAUUGCUCCUGCAGCAGUUCAUAUCGGUAAGUGACU-AGA---UUUUGCAUAGCUUUC------------- ....((.((((..((((((..............(((.(((.(((((..((((((.....))))))..)))))))).)))))))-)).---........)))).))------------- ( -19.63, z-score = -0.29, R) >droWil1.scaffold_181009 2721506 99 - 3585778 CAUUGAUAGUUUUCUAGUGCAGCCCAUACAAAGACUGACCCGUUAUCCUUUGCUAUUGCAGCAAUUCAUAUCGGUAAGU-----UCCACUUACUUUAAGGCUCG-------------- ((((((......)).)))).((((................((.(((...(((((.....)))))...))).))(((((.-----....))))).....))))..-------------- ( -15.90, z-score = 0.08, R) >droPer1.super_4 6999733 102 - 7162766 CAUCGAUAGCUUCCUUGUGCAGCCCAUACAAAGACUGACCAGAUAUCCAUUGCUGUUGCAGCAAUUCAUAUCGGUAAGAGACU-GGAAUUCUUUAUCCAGAUC--------------- ...........((.(((((.......))))).))((.(((.(((((..(((((((...)))))))..)))))))).))...((-(((........)))))...--------------- ( -23.30, z-score = -0.94, R) >dp4.chr3 16598793 102 + 19779522 CAUCGAUAGCUUCCUUGUGCAGCCCAUACAAAGACUGACCAGAUAUCCAUUGCUGUUGCAGCAAUUCAUAUCGGUAAGAGACU-GGAAUUCUUUAUCCAGAUC--------------- ...........((.(((((.......))))).))((.(((.(((((..(((((((...)))))))..)))))))).))...((-(((........)))))...--------------- ( -23.30, z-score = -0.94, R) >droAna3.scaffold_13266 6283011 98 - 19884421 CAUCGACAGCUUCCUAGUUCAGCCCAUCCAAAGACUGACAAGAUAUCCAUUGCUUCUGCAGCAAUUUAUAUCGGUAAGAUAUC-UU----CUUCUCACAAAUA--------------- ....((...(((((..((.(((.(........).)))))..(((((..((((((.....))))))..))))))).)))...))-..----.............--------------- ( -15.40, z-score = -0.75, R) >droEre2.scaffold_4845 9747486 98 - 22589142 CAUCGACAGCUUCCUAGUGCAGCCCAUCCAAAGACUGACCAGAUAUCCAUUGCUCCUGCAGCAGUUCAUAUCGGUAGGUAAC--GCA---UUUUACACCAAUC--------------- ........(((((((....(((.(........).)))(((.(((((..((((((.....))))))..))))))))))).)).--)).---.............--------------- ( -16.70, z-score = 0.03, R) >droYak2.chr2R 2673754 101 - 21139217 CAUCGACAGCUUCCUAGUUCAGCCCAUCCAAAGACUGACCAGAUAUCCAUUGCUACUGCAGCAGUUCAUAUCGGUAAGUAACU-AAG---CUUAUCAUACAUAGU------------- ................(.((((.(........).)))).).(((((..((((((.....))))))..)))))(((((((....-..)---)))))).........------------- ( -18.50, z-score = -0.99, R) >droSec1.super_1 10511430 101 + 14215200 CAUCGACAGCUUCCUAGUUCAGCCCAUCCAAAGACUGACCAGAUAUCCAUUGCUCCUGCAGCAGUUCAUAUCAGUAAGUAACU-AGA---UUUCGCACAGCUUGU------------- ........((...(((((((((.(........).))))...(((((..((((((.....))))))..)))))........)))-)).---....)).........------------- ( -15.90, z-score = 0.23, R) >droSim1.chr2R 11738869 101 + 19596830 CAUCGACAGCUUCCUAGUUCAGCCCAUCCAAAGACUGACCAGAUAUCCAUUGCUCCUGCAGCAGUUCAUAUCGGUAAGUAACU-AGA---UUUCGCACAGCUUGU------------- ........((...((((((..............(((.(((.(((((..((((((.....))))))..)))))))).)))))))-)).---....)).........------------- ( -18.23, z-score = -0.11, R) >droVir3.scaffold_12875 7669798 116 + 20611582 CAUUGAUAGUUUUCUAGUGCAGCCCAUACAAAGACUGACCAGAUAUCCGUUGCUGCUACAGCAAUUCAUAUCGGUAAGUAGAUAUAUAGUACAUAUAUAGGCCGAACCAUAUAUAU-- ((((((......)).))))..(((.........(((.(((.(((((..(((((((...)))))))..)))))))).)))...((((((.....)))))))))..............-- ( -23.90, z-score = -0.96, R) >droMoj3.scaffold_6496 7191318 111 - 26866924 CAUCGACAGUUUUCUAGUGCAGCCCAUACAAAGACUGACCAGAUAUCCAUUGCUGUUGCAGCAAUUCAUAUCGGUAGGU-------GAACCCCGAUAAGAGUCGAUCUAUAUAUAUCC .((((((.....(((.((.(((.(........).))))).))).....(((((((...)))))))((.((((((..((.-------...)))))))).))))))))............ ( -27.50, z-score = -2.19, R) >droGri2.scaffold_15245 1193517 99 + 18325388 CAUCGAUAGUUUUCUAGUGCAGCCCAUACAAAGACUGACCAGAUAUCCAUUGCUGCUACAGCAAUUCAUAUCGGUAAGU-------UAAGCAC--------UCCACUUGUGUAC---- ...............(((((.(......)...((((.(((.(((((..(((((((...)))))))..)))))))).)))-------)..))))--------)............---- ( -22.10, z-score = -1.47, R) >consensus CAUCGACAGCUUCCUAGUGCAGCCCAUACAAAGACUGACCAGAUAUCCAUUGCUGCUGCAGCAAUUCAUAUCGGUAAGUAACU_AGA___CUUUACACAGAUCG______________ ..................................((.(((.(((((..((((((.....))))))..)))))))).))........................................ (-12.20 = -12.08 + -0.12)
| Location | 13,001,004 – 13,001,105 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 74.04 |
| Shannon entropy | 0.54419 |
| G+C content | 0.43198 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -16.23 |
| Energy contribution | -16.09 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13001004 101 - 21146708 -------------GAAAGCUAUGCAAAA---UCU-AGUCACUUACCGAUAUGAACUGCUGCAGGAGCAAUGGAUAUCUGGUCAGUCUUUGGAUGGGCUGAACUAGGAAGCUGUCGAUG -------------((.((((.......(---(((-((((.......)))......((((.....)))).))))).((((((((((((......)))))).)))))).)))).)).... ( -25.80, z-score = -0.40, R) >droWil1.scaffold_181009 2721506 99 + 3585778 --------------CGAGCCUUAAAGUAAGUGGA-----ACUUACCGAUAUGAAUUGCUGCAAUAGCAAAGGAUAACGGGUCAGUCUUUGUAUGGGCUGCACUAGAAAACUAUCAAUG --------------((..((((...(((((....-----.)))))..........(((((...)))))))))....))(((((((((......)))))).)))............... ( -19.90, z-score = 0.08, R) >droPer1.super_4 6999733 102 + 7162766 ---------------GAUCUGGAUAAAGAAUUCC-AGUCUCUUACCGAUAUGAAUUGCUGCAACAGCAAUGGAUAUCUGGUCAGUCUUUGUAUGGGCUGCACAAGGAAGCUAUCGAUG ---------------((.(((((........)))-)))).(((.(((((((..(((((((...)))))))..)))))..((((((((......)))))).))..)))))......... ( -30.60, z-score = -2.00, R) >dp4.chr3 16598793 102 - 19779522 ---------------GAUCUGGAUAAAGAAUUCC-AGUCUCUUACCGAUAUGAAUUGCUGCAACAGCAAUGGAUAUCUGGUCAGUCUUUGUAUGGGCUGCACAAGGAAGCUAUCGAUG ---------------((.(((((........)))-)))).(((.(((((((..(((((((...)))))))..)))))..((((((((......)))))).))..)))))......... ( -30.60, z-score = -2.00, R) >droAna3.scaffold_13266 6283011 98 + 19884421 ---------------UAUUUGUGAGAAG----AA-GAUAUCUUACCGAUAUAAAUUGCUGCAGAAGCAAUGGAUAUCUUGUCAGUCUUUGGAUGGGCUGAACUAGGAAGCUGUCGAUG ---------------.............----..-((((.(((.(((((((..((((((.....))))))..)))))...(((((((......)))))))....))))).)))).... ( -28.50, z-score = -2.58, R) >droEre2.scaffold_4845 9747486 98 + 22589142 ---------------GAUUGGUGUAAAA---UGC--GUUACCUACCGAUAUGAACUGCUGCAGGAGCAAUGGAUAUCUGGUCAGUCUUUGGAUGGGCUGCACUAGGAAGCUGUCGAUG ---------------.((((((((((..---...--.))))..)))))).(((...(((((....))........((((((((((((......)))))).)))))).)))..)))... ( -25.30, z-score = -0.02, R) >droYak2.chr2R 2673754 101 + 21139217 -------------ACUAUGUAUGAUAAG---CUU-AGUUACUUACCGAUAUGAACUGCUGCAGUAGCAAUGGAUAUCUGGUCAGUCUUUGGAUGGGCUGAACUAGGAAGCUGUCGAUG -------------........(((((..---(((-((((....((((((((..(.(((((...))))).)..))))).)))((((((......)))))))))))))....)))))... ( -25.70, z-score = -0.56, R) >droSec1.super_1 10511430 101 - 14215200 -------------ACAAGCUGUGCGAAA---UCU-AGUUACUUACUGAUAUGAACUGCUGCAGGAGCAAUGGAUAUCUGGUCAGUCUUUGGAUGGGCUGAACUAGGAAGCUGUCGAUG -------------...((((.......(---((.-(((.....)))))).....((..(((....)))..))...((((((((((((......)))))).)))))).))))....... ( -23.20, z-score = 0.56, R) >droSim1.chr2R 11738869 101 - 19596830 -------------ACAAGCUGUGCGAAA---UCU-AGUUACUUACCGAUAUGAACUGCUGCAGGAGCAAUGGAUAUCUGGUCAGUCUUUGGAUGGGCUGAACUAGGAAGCUGUCGAUG -------------...((((........---(((-((((....((((((((..(.((((.....)))).)..))))).)))((((((......))))))))))))).))))....... ( -25.10, z-score = 0.07, R) >droVir3.scaffold_12875 7669798 116 - 20611582 --AUAUAUAUGGUUCGGCCUAUAUAUGUACUAUAUAUCUACUUACCGAUAUGAAUUGCUGUAGCAGCAACGGAUAUCUGGUCAGUCUUUGUAUGGGCUGCACUAGAAAACUAUCAAUG --((((((((((......))))))))))....((((((........))))))..((((((...))))))..((((((((((((((((......)))))).))))))....)))).... ( -31.70, z-score = -2.06, R) >droMoj3.scaffold_6496 7191318 111 + 26866924 GGAUAUAUAUAGAUCGACUCUUAUCGGGGUUC-------ACCUACCGAUAUGAAUUGCUGCAACAGCAAUGGAUAUCUGGUCAGUCUUUGUAUGGGCUGCACUAGAAAACUGUCGAUG ............((((((((.((((((((...-------.))..)))))).))(((((((...))))))).....((((((((((((......)))))).)))))).....)))))). ( -37.50, z-score = -3.65, R) >droGri2.scaffold_15245 1193517 99 - 18325388 ----GUACACAAGUGGA--------GUGCUUA-------ACUUACCGAUAUGAAUUGCUGUAGCAGCAAUGGAUAUCUGGUCAGUCUUUGUAUGGGCUGCACUAGAAAACUAUCGAUG ----((((.(.....).--------))))...-------......(((((...(((((((...))))))).....((((((((((((......)))))).))))))....)))))... ( -27.70, z-score = -1.46, R) >consensus ______________CGAUCUGUGUAAAG___UCU_AGUUACUUACCGAUAUGAAUUGCUGCAGCAGCAAUGGAUAUCUGGUCAGUCUUUGGAUGGGCUGCACUAGGAAGCUGUCGAUG .............................................(((((.....((((.....)))).......(((.((((((((......)))))).)).)))....)))))... (-16.23 = -16.09 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:59 2011