| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,094,775 – 3,094,874 |
| Length | 99 |
| Max. P | 0.617031 |
| Location | 3,094,775 – 3,094,874 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 93.82 |
| Shannon entropy | 0.10303 |
| G+C content | 0.54299 |
| Mean single sequence MFE | -33.86 |
| Consensus MFE | -29.18 |
| Energy contribution | -28.78 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617031 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3094775 99 + 23011544 GCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAACGCCAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGGGAAACAGCGAUCCCG .(((.(((....))).)))...((((.(((........((((....(((....))).......((((((....))))))--))))(....).))).)))). ( -31.50, z-score = -0.71, R) >droEre2.scaffold_4929 3137367 99 + 26641161 GCACUUGAACGGUCAAGUGGCAGGGAGCGCAGAAAACGCAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGGGAAAUAGCGAUCCCG .(((((((....)))))))...(((((((((((...(....)..))))).(((.((.((((((.((....)).))))))--.)).)))....))..)))). ( -35.10, z-score = -2.15, R) >droYak2.chr2L 3086215 99 + 22324452 GCACUUGAACACUCAAGUGGCAGGGAGCGCAGAAAACGAAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG--CUGGAGAAAUAGCGAUCCCG .(((((((....)))))))...(((((((((((...(....)..))))).(((.((.((((((.((....)).))))))--.)).)))....))..)))). ( -35.30, z-score = -3.26, R) >droSec1.super_5 1246455 101 + 5866729 GCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAGCGCAAGAAUCUGCAUCUGCAACUGAAUCCGAAUCUCAAUUCGGUGCUGGGGAAACAGCGAUCCCG (((((.......(((.((.(((((....(((((...(....)..))))).))))).)))))....((((....)))))))))..((((........)))). ( -33.70, z-score = -1.11, R) >droSim1.chr2L 3032625 101 + 22036055 GCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAGCGCAAGAAUCUGCAUCUGCAACUGAAUCCGAAUCUCAAUUCGGUGCUGGGGAAACAGCGAUCCCG (((((.......(((.((.(((((....(((((...(....)..))))).))))).)))))....((((....)))))))))..((((........)))). ( -33.70, z-score = -1.11, R) >consensus GCACCUGAACGCUCAAGUGGCAGGGAGCGCAGAAAACGCAAGAAUCUGCAUCUGCAACUGAAUCCGAGUCUGAAUUCGG__CUGGGGAAACAGCGAUCCCG .(((.(((....))).)))...(((((((((((...(....)..))))).(((.((.......((((((....))))))...)).)))....))..)))). (-29.18 = -28.78 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:02 2011