| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,992,083 – 12,992,193 |
| Length | 110 |
| Max. P | 0.706165 |
| Location | 12,992,083 – 12,992,193 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.49990 |
| G+C content | 0.56627 |
| Mean single sequence MFE | -37.19 |
| Consensus MFE | -19.28 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.706165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12992083 110 - 21146708 GUCAAAUCCUUUCACGCGUUUCCUUACCGGCACUGCGGGUGGAACCCUCUUCUUCCUUUUUCGCGGCGGAAGCGGAUCAUCACGGGUGUCUGUGCUCACGGACACUCCAC---------- .....((((.....((((.......(((.((...)).)))((((........)))).....))))((....))))))......((((((((((....)))))))).))..---------- ( -36.80, z-score = -1.99, R) >droSim1.chr2R 11729553 110 - 19596830 UUCAAAUCCUUUCACGCGUUUCCUUGCCGGCACUGCGGGUGGAACCCUCUUCUUUCUUUUACGCGGCGGAAGCGGAUCAUCGCGAGUGUCUGUGCUCACGGAGACUCCAG---------- .....((((.....(((((((((..(((.((...)).)))))))................)))))((....))))))....(.((((.(((((....))))).)))))..---------- ( -34.59, z-score = -0.54, R) >droSec1.super_1 10502544 110 - 14215200 UUCAAAUCCUUUCACGCGUUUCCUUGCCGGCACUGCGGGUGGAACCCUCUUCUUCCUUUUCCGCGGCGGAAGCGGAUCAUCGCGGGUGUCUGUACUCACGGACACUCCAG---------- ...............(((..(((...(((...(((((((.((((........))))...))))))))))....)))....)))((((((((((....)))))))).))..---------- ( -39.50, z-score = -2.33, R) >droYak2.chr2R 2664713 110 + 21139217 GUCAUAGCCAUCCACGCGUCUCCUAGCCGGCACUUCUGGUGGCACCUUCUUUUUCUUUUUACGCGGCGGAAACGGAUCAUCACGGGUGUCCGUGCCCGUGGACACUCCAA---------- (((......((((.(((((......((((.((....)).)))).................)))))..(....)))))...(((((((......)))))))))).......---------- ( -32.70, z-score = -0.48, R) >droEre2.scaffold_4845 9738695 110 + 22589142 GUCAUAUCCAUCCACGUGUUUCCGCGCCGGCACUUUUGGCGGAACCUUCUUUACCUUUUUCCGCGGCGGUAAGGGAUCGUCGUGGGUAUCUGUGCUCACGGACACUCCAG---------- .........(((((((((.((((..((((.(.(....)((((((..............))))))).))))..)))).)).))))))).(((((....)))))........---------- ( -34.94, z-score = -1.11, R) >droAna3.scaffold_13266 6274505 116 + 19884421 UCCGGAGUCAUUGGAAUCUUUUUUC-CCGGCGGCAAUGGCCGCACCUUCUUUUUCUUU---CGUCGUGGAAAAGGAUCAUCACUGGUCCCGGUGCCCUGGGAGACAUAGGUAGGCUUCGG .((((((((......((((..((((-((((.(((....)))(((((....((((((..---......))))))((((((....)))))).))))).))))))))...)))).)))))))) ( -44.60, z-score = -1.95, R) >consensus GUCAAAUCCAUUCACGCGUUUCCUUGCCGGCACUGCGGGUGGAACCCUCUUCUUCCUUUUACGCGGCGGAAACGGAUCAUCACGGGUGUCUGUGCUCACGGACACUCCAG__________ ................(((((((..((((.(......((..(((.....)))..))......)))))))))))).........((((((((((....))))))))))............. (-19.28 = -19.98 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:57 2011