| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,971,340 – 12,971,486 |
| Length | 146 |
| Max. P | 0.615082 |
| Location | 12,971,340 – 12,971,486 |
|---|---|
| Length | 146 |
| Sequences | 5 |
| Columns | 147 |
| Reading direction | reverse |
| Mean pairwise identity | 86.54 |
| Shannon entropy | 0.23563 |
| G+C content | 0.46158 |
| Mean single sequence MFE | -43.56 |
| Consensus MFE | -32.34 |
| Energy contribution | -32.18 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.615082 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12971340 146 - 21146708 ACGGCUUUGAACAAAUUCCGAAGUGGAAAUCCAAGACGGAGCAUUUGUUUACAGUCUUCGCUGGUUCAAUGUUCCCAUUC-UAGUUUCUAAGCCAUUUUGGCAGCACAAGUGUGCUAAUUUCGCAAGUUGUGAUUAUUCCGAAACCU ..(((((.((((...((((.....)))).....(((.((((((((.(....((((....))))...)))))))))...))-).))))..))))).((((((.(((((....)))))....((((.....)))).....))))))... ( -39.70, z-score = -1.88, R) >droSim1.chr2R 11709056 146 - 19596830 ACGGCUUUGGACAAAUUCCGAGGUGGAAACCCAAGACGGAGCAUUUGUUUACAGGCCCCGCUGGUUCAAUGCUCCCAUUC-UAGUUUGUAAACCAUUUCGGCAGCACAAGUGUGCUAAUUUCGCAAGUUGUGAUUAUUCCGAAACCC ..((.((((((......(((((((((((((...(((.((((((((.(....(((......)))...)))))))))...))-).)))).....))))))))).(((((....)))))....((((.....))))....)))))).)). ( -43.70, z-score = -1.71, R) >droSec1.super_1 10482154 146 - 14215200 ACGGCUUUGGACAAAUUCCGAGGUGGAAACCCAAGACGGAACAUUUGUUUACAGGCCCCGCUGGUUCAAUGCUCCCAUUC-UAGUUUCUAAACCAUUUCGGCAGCACAAGUGUGCUAAUUUCGCAAGUUGUGAUUAUUCCGAAACCC ..((((((((((((((((((...(((....)))...))))..))))))))).)))))....(((((....(((.......-.))).....)))))((((((.(((((....)))))....((((.....)))).....))))))... ( -41.10, z-score = -1.45, R) >droYak2.chr2R 2643916 145 + 21139217 ACGGCUUCGGACAAAUUCCGAAGUGGAAACCCAAGACGGGGCAUUUGUUUACCAGCCCCACUGGUUCAAUGCUCUCCUUC--UGGCUCAGAACCUUUUUUGAGGCACAAGUGUGCUAAUUUCGCAAGUUGUGAUUAUGCCAAAACUU ...((((((((.....))))))))(((..(((.....)))(((((.(...(((((.....))))).))))))..)))...--((((((((((....))))))(((((....)))))....((((.....))))....))))...... ( -45.40, z-score = -1.95, R) >droEre2.scaffold_4845 9717833 145 + 22589142 GCGGCUUUGGACAGAUUCCGAAGUGGAAACCCAAGGCGGAGCAUUUGUUUACCGG-CCCACUGGUUCAAUGCUCUGGUUCGACGGCUUAGAACC-UUUUUGCAGCACAAGUGUGCUAGUUUCGCAAGUUGUGAUUAUUCCAAAACUU ((.((((((((.....)))))))).(((((.....((((((((((.(...(((((-....))))).)))))))))(((((.........)))))-.....))(((((....))))).)))))))(((((.((.......)).))))) ( -47.90, z-score = -1.77, R) >consensus ACGGCUUUGGACAAAUUCCGAAGUGGAAACCCAAGACGGAGCAUUUGUUUACAGGCCCCGCUGGUUCAAUGCUCCCAUUC_UAGUUUCUAAACCAUUUUGGCAGCACAAGUGUGCUAAUUUCGCAAGUUGUGAUUAUUCCGAAACCU .(.((((((((.....)))))))).)...........((((((((.(....(((......)))...)))))))))....................((((((.(((((....)))))....((((.....)))).....))))))... (-32.34 = -32.18 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:53 2011