Locus 4425

Sequence ID	dm3.chr2R
Location	12,955,862 – 12,955,973
Length	111
Max. P	0.519541

overview

Window 8

Location	12,955,862 – 12,955,973
Length	111
Sequences	12
Columns	120
Reading direction	reverse
Mean pairwise identity	81.10
Shannon entropy	0.38257
G+C content	0.48925
Mean single sequence MFE	-31.84
Consensus MFE	-18.15
Energy contribution	-17.50
Covariance contribution	-0.65
Combinations/Pair	1.23
Mean z-score	-1.60
Structure conservation index	0.57
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.05
SVM RNA-class probability	0.519541
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 12955862 111 - 21146708
UGGUCAUGCCCAUGGUG---------CACAACGCCAUGCCCACCUUCGAUGAUUUUGACUUCGAGGAGUUCCUCUCCUCAUUCGAGAACGAGAAUGACGACGAGCAAUUCCCGCUGUUCA
..(((((...(((((((---------.....)))))))......(((((.((........))((((((.....))))))..))))).......)))))...(((((........))))). ( -32.30, z-score =  -1.39, R)
>droGri2.scaffold_15245 1138313 108 - 18325388
UGGGCAUGACCAAGAUG------------CCCGUGUUGCCCACAUUUGAUGAUUUUGAUUUUGAGGAAUUUCUCUCAUCAUUCGAGAAUGAGAAUGAUGAGGAGCAAUUUCCGCUGUUUC
.((((((.......)))------------)))(((.....))).....................((((.((((((((((((((........))))))))).))).)).))))........ ( -32.10, z-score =  -1.77, R)
>droMoj3.scaffold_6496 14370850 108 - 26866924
UGACGCUGCCCAAUAUG------------CCUGUGCUGCCCACGUUUGAUGACUUCGACUUUGAGGAAUUUCUGUCAUCAUUCGAGAACGAGAAUGAUGACGAGCAAUUUCCGCUGUUCC
....((.((.((.....------------..)).)).))....(((....)))...(((..((.((((((.((((((((((((........)))))))))).)).))))))))..))).. ( -25.60, z-score =  -0.80, R)
>droVir3.scaffold_12875 7610706 108 - 20611582
UGAAUUUACCCAAUAUG------------CCAGUGCUGCCCACGUUUGAUGACUUUGAUUUCGAGGAAUUUCUCUCAUCAUUCGAGAACGAUAAUGAUGAGGAGCAAUUUCCGCUGUUUC
.................------------.(((((.(((.............(((((....)))))....((.(((((((((((....)))..))))))))))))).....))))).... ( -21.90, z-score =   0.15, R)
>droWil1.scaffold_181009 2639865 111 + 3585778
UGGUCAUGCCCAGUC---------ACAAUAAUCUGAUGCCGAGCUUCGAUAAUUUCGAUUUUGAGGAAUUUCUCUCGUCAUUCGAGAAUGAGAAUGAUGAGGAGCAAUUUCCCUUGUUUC
.((.(((...(((..---------........))))))))((((.((((.....))))......((((.((((((((((((((........))))))))).))).)).))))...)))). ( -26.60, z-score =   0.11, R)
>droPer1.super_2 6410699 105 - 9036312
UGGUCAUGCCGAUG---------------GGCAACAUGCCCACCUUCGACGACUUUGACUUUGAGGAGUUUCUCUCCUCAUUCGAGAACGAGAAUGACGACGAGCAGUUCCCGCUGUUCA
..(((((..(((((---------------(((.....)))))...))).((..(((((...(((((((.....))))))).)))))..))...)))))...(((((((....))))))). ( -39.00, z-score =  -3.18, R)
>dp4.chr3 6195854 105 - 19779522
UGGUCAUGCCGAUG---------------GGCAACAUGCCCACCUUCGACGACUUUGACUUUGAGGAGUUUCUCUCCUCAUUCGAGAACGAGAAUGACGACGAGCAGUUCCCGCUGUUCA
..(((((..(((((---------------(((.....)))))...))).((..(((((...(((((((.....))))))).)))))..))...)))))...(((((((....))))))). ( -39.00, z-score =  -3.18, R)
>droAna3.scaffold_13266 6239912 120 + 19884421
UGGUUAUGCCCAUGGUGCAACAUGCCCAUAGCAACAUGCCCACCUUCGAUGACUUUGACUUCGAGGAGUUCCUCUCCUCAUUCGAAAACGAGAAUGACGACGAGCAGUUCCCCCUGUUCA
.(((..(((..((((.((.....)))))).)))....))).....(((..............((((((.....)))))).((((....)))).....))).((((((......)))))). ( -32.50, z-score =  -1.76, R)
>droEre2.scaffold_4845 9702645 111 + 22589142
UGGUCAUGCCCAUGGUG---------CACAACGCCAUGCCCACCUUCGAUGAUUUUGACUUUGAGGAGUUCCUCUCCUCAUUCGAGAACGAGAAUGAUGACGAGCAAUUCCCGCUGUUCA
..(((((...(((((((---------.....)))))))..((..((((....((((((...(((((((.....))))))).)))))).))))..)))))))(((((........))))). ( -35.10, z-score =  -2.43, R)
>droYak2.chr2R 2627796 111 + 21139217
UGGUCAUGCCCAUGGUG---------CACAACGCCAUGCCCACCUUUGAUGAUUUUGACUUUGAGGAGUUCCUCUCCUCAUUCGAGAACGAGAAUGACGACGAGCAAUUCCCGCUGUUCA
..(((((...(((((((---------.....)))))))...........((.((((((...(((((((.....))))))).)))))).))...)))))...(((((........))))). ( -33.40, z-score =  -2.14, R)
>droSec1.super_1 10464356 111 - 14215200
UGGUCAUGCCCAUGGUG---------CACAACGCCAUGCCCACCUUCGAUGAUUUUGACUUCGAGGAGUUCCUCUCCUCAUUCGAGAACGAGAAUGACGACGAGCAAUUCCCGCUGUUCA
..(((((...(((((((---------.....)))))))......(((((.((........))((((((.....))))))..))))).......)))))...(((((........))))). ( -32.30, z-score =  -1.39, R)
>droSim1.chr2R 11692212 111 - 19596830
UGGUCAUGCCCAUGGUG---------CACAACGCCAUGCCCACCUUCGAUGAUUUUGACUUCGAGGAGUUCCUCUCCUCAUUCGAGAACGAGAAUGACGACGAGCAAUUCCCGCUGUUCA
..(((((...(((((((---------.....)))))))......(((((.((........))((((((.....))))))..))))).......)))))...(((((........))))). ( -32.30, z-score =  -1.39, R)
>consensus
UGGUCAUGCCCAUGGUG_________CA_AACGCCAUGCCCACCUUCGAUGAUUUUGACUUUGAGGAGUUCCUCUCCUCAUUCGAGAACGAGAAUGACGACGAGCAAUUCCCGCUGUUCA
........................................................(((..((.((((((.(((((.((((((........)))))).)).))).))))))))..))).. (-18.15 = -17.50 +  -0.65)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:52 2011