| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,951,543 – 12,951,700 |
| Length | 157 |
| Max. P | 0.982305 |
| Location | 12,951,543 – 12,951,700 |
|---|---|
| Length | 157 |
| Sequences | 3 |
| Columns | 158 |
| Reading direction | forward |
| Mean pairwise identity | 90.91 |
| Shannon entropy | 0.12205 |
| G+C content | 0.29818 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -30.91 |
| Energy contribution | -30.80 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12951543 157 + 21146708 UGAUAGCUUAUAUUUUAUUAUAAACGGAUAUCGAAAAACGAUUAAAAUAUAUUCUUUGGAGAAAAGUAUACUUUCGCUUACAAGGGCAAU-UAAAUUUGUGCUGAGGUGGAGAUGAUCUUUUUCAAAGUGAAAUAUUUUCCAGUUUUUUAAAUUCCAC .....(.(((((......))))).)(((....(((((((....(((((((.((((((((((((...(((...(((((((...((.((((.-.....)))).)).))))))).)))...)))))))))).)).)))))))...)))))))....))).. ( -34.30, z-score = -2.23, R) >droSec1.super_1 10460091 147 + 14215200 -----------AUUUGAUCAUAAACGGAUAUCGAAAAACGAUUAAAAUAUAAUCUUUGGAGAAAAGUAUACUUUCGCUUACAAGGGCAAAGUAAAUUUGUGCUAAGGUGGAGAUGAUCUUUCCCAAAGUGAAAUAUUUUCCAGUUUUUUACAUUCCAC -----------..............(((....((((((((((((.....)))))..(((((((..(....)((((((((...((.(((((.....))))).))..((..(((.....)))..)).))))))))..))))))))))))))....))).. ( -34.50, z-score = -2.56, R) >droSim1.chr2R 11687983 146 + 19596830 -----------AUUUGAUCAUAAACGGAUAUCGAAAAACGAUUAAAAUAUAAUCUUUGGAGAAAAGUAUACUUUCGCUUACAAGGGCAAA-UAAAUUUGUUCUAAGGUGGAGAUGAUCUUUCCCAAAGUGAAAUAUUUUCCAGUUUUUUACAUUCCAC -----------..............(((....((((((((((((.....)))))..(((((((..(....)((((((((...((((((((-....))))))))..((..(((.....)))..)).))))))))..))))))))))))))....))).. ( -34.70, z-score = -2.92, R) >consensus ___________AUUUGAUCAUAAACGGAUAUCGAAAAACGAUUAAAAUAUAAUCUUUGGAGAAAAGUAUACUUUCGCUUACAAGGGCAAA_UAAAUUUGUGCUAAGGUGGAGAUGAUCUUUCCCAAAGUGAAAUAUUUUCCAGUUUUUUACAUUCCAC .........................(((....(((((((....(((((((...((((((.((((..(....((((((((...((.(((((.....))))).)).))))))))...)..))))))))))....)))))))...)))))))....))).. (-30.91 = -30.80 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:51 2011