| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,939,304 – 12,939,414 |
| Length | 110 |
| Max. P | 0.585022 |
| Location | 12,939,304 – 12,939,414 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.03 |
| Shannon entropy | 0.35826 |
| G+C content | 0.50125 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -14.23 |
| Energy contribution | -14.36 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12939304 110 + 21146708 -AAACCGAUCUAU--CUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCAGCGGCAAAACUGCACCCAAAUCCGAACUGC---GAGACACAUAAACUCGCGACUGGUGACCA---- -..((((((((((--......)))))))......(((........((((.....(..(((....)))..).....))))...((---(((.........)))))))).))).....---- ( -26.70, z-score = -1.60, R) >droGri2.scaffold_15112 4179981 112 - 5172618 CAAACCGAUCUAUAUCUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCCGCGGCAAAACUGCACCCAAAUCCGAAUUGU---GAAACGCUCAAGCCAGCAGCUGGCGAGU----- ......((((((((......))))))))((((......))))...((((.....(..(((....)))..).....)))).....---.....((((..(((((...)))))))))----- ( -28.20, z-score = -0.85, R) >droMoj3.scaffold_6496 23949824 113 + 26866924 CAAACCGAUCUAUAUCUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCAUCCGCUGCAAAACUGUACCCAAAACUGAAUUGU---GAAUCGCUCAAACUGUUAGCUGUCCAAAC---- ......((((((((......)))))))).(((.((...((((.....))))..)).))).....................(((.---((...(((.........)))..)))))..---- ( -19.90, z-score = -1.01, R) >droVir3.scaffold_12875 14519398 113 - 20611582 CAAACCGAUCUAUAUCUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCCGCAGCAAAACUGCAUCCAAAUCCAAAUUGU---GAAACGCUCAAAUUAGCAGCUGGCGAGCC---- ......((((((((......)))))))).((..(((((((((.....(((....((((.....)))).(((((.......))).---))...)))......)))))..)))).)).---- ( -27.80, z-score = -2.02, R) >droWil1.scaffold_181009 2621768 115 - 3585778 -AAUCCGAUCUAUAUCUUCUUGUAGAUCAAAAACGUCCUGCUUUCUCGGCCUCUGAAGCUAAACUCCACACAAAUCCCAAGUGU---GAAACGCUCAAACU-UGACCUAGUCCAACAUCA -.....((((((((......))))))))......(..(((((...((((...)))))))..................(((((.(---((.....))).)))-))....))..)....... ( -19.40, z-score = -2.01, R) >droPer1.super_2 6393707 115 + 9036312 -AAACCGAUCUAUAUCUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCCGCGGCAAAACUGCACUCGAAUCCGAAGUGCUCCGAUACGCUCGCUCCCGCAACGAGUGAGCU---- -.....((((((((......))))))))((((......))))...((((((.....)))......(((((((....)).)))))..)))...((((((((.......)))))))).---- ( -38.90, z-score = -3.78, R) >dp4.chr3 6178843 115 + 19779522 -AAACCGAUCUAUAUCUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCCGCGGCAAAACUGCACUCGAAUCCGAAGUGCUCCGAUACGCUCGCUCCCGCAACGAGUGAGCU---- -.....((((((((......))))))))((((......))))...((((((.....)))......(((((((....)).)))))..)))...((((((((.......)))))))).---- ( -38.90, z-score = -3.78, R) >droAna3.scaffold_13266 6222891 112 - 19884421 -AAACCGAUCUAUAUCUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCCGCGGCAAAACUGCACCCAAAUCCGAACUGC---GAAGCCCACAAACUAGCUUCCGGUGACCA---- -.....((((((((......))))))))((((......))))...((((.....(..(((....)))..).....))))((((.---(((((..........))))))))).....---- ( -28.00, z-score = -2.48, R) >droEre2.scaffold_4845 9686262 110 - 22589142 -AAACCGAUCUAU--CUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCUGCGGCAAAACUGCACCCAAAUCCGAACUGC---GAGACACACAAACUCGCGACUGGUGACCA---- -..((((((((((--......)))))))......(((........((((....(((((.....))))).......))))...((---(((.........)))))))).))).....---- ( -27.90, z-score = -2.11, R) >droYak2.chr2R 2611112 110 - 21139217 -AAACCGAUCUAU--CUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCUGCGGCAAAACUGCACCCAAAUCCGAACUGC---GAGACACACAAACUCGCGACUGGUGACCA---- -..((((((((((--......)))))))......(((........((((....(((((.....))))).......))))...((---(((.........)))))))).))).....---- ( -27.90, z-score = -2.11, R) >droSec1.super_1 10447846 110 + 14215200 -AAACCGAUCUAU--CUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCUGCGGCAAAACUGCACCCAAAUCCGAACUGC---GAGACACAAAAAUUCGUGACGGGUGACCA---- -.....(((((((--......)))))))......(((.(((....((((....(((((.....))))).......))))...))---).)))...............((....)).---- ( -27.80, z-score = -1.54, R) >droSim1.chr2R 11675491 110 + 19596830 -AAACCGAUCUAU--CUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCUGCGGCAAAACUGCACCCAAAUCCGAACUGC---GAGACACAUAAAUUCGCGACGGGUGACCA---- -..((((((((((--......))))))).....((((........((((....(((((.....))))).......))))...((---(((.........)))))))))))).....---- ( -27.80, z-score = -1.50, R) >consensus _AAACCGAUCUAUAUCUACUUGUAGAUCAGCAACGUCCUGCUUUCUCGGCCUCCGCGGCAAAACUGCACCCAAAUCCGAACUGC___GAAACGCACAAACUCGCAACUGGUGACCA____ ....(((((((((........)))))))((((......)))).....)).....((((.....))))..................................................... (-14.23 = -14.36 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:50 2011