| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,918,261 – 12,918,381 |
| Length | 120 |
| Max. P | 0.719484 |
| Location | 12,918,261 – 12,918,381 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.74 |
| Shannon entropy | 0.19799 |
| G+C content | 0.34903 |
| Mean single sequence MFE | -25.01 |
| Consensus MFE | -19.12 |
| Energy contribution | -19.12 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12918261 120 + 21146708 UAAUUGUAACCACAGAGACGGUAGUCACCAAAUCAGUGUGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUAUUGGUGACAACUAAUCUGAGUAAAUGAAGAUAAAGA ............((((...(((.(((((((((((.((.(........).))........(((((((.......)))))))))).)))))))).)))..)))).................. ( -25.50, z-score = -2.58, R) >droEre2.scaffold_4845 9665314 119 - 22589142 UUAUUUUAAACACAGAGGCGGUAGUCAGAAA-UCUGUGUGUAUAAAAAGGCGAUAAUAGGUUUUACAAGAUAAUUAAAAUGGUGCUGGUGACAACCAAUCUGAGUAAAUGGAGAUAAAGA (((((((..((.(((((((....))).((((-(((((.(((........)))...)))))))))...............((((..((....)))))).)))).)).....)))))))... ( -23.60, z-score = -1.58, R) >droYak2.chr2R 2590085 119 - 21139217 UAAUUUUAAGCACAGAGACGGUAGUCAGCAA-UCUGUAUGCAUAAAAGGGCGAUAAUAGGUUUUACAAGAUAAAUAAAAUGGUGCCGUUGACAACCAAUCUGAGUAAAUGGUGAUAAAGA .........((.((((...(((.((((((..-..((....))......((((.......((((........)))).......)))))))))).)))..)))).))............... ( -23.94, z-score = -1.22, R) >droSec1.super_1 10426737 118 + 14215200 --ACAAUAAGCACAGAGGCGGUAGUCACCAAAUCAGUGUGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUGCUGGUGACAGCUAAUCUGAGUAAAUGAAGAUAAAGA --.......((.((((...(((.(((((((.(((.((.(........).))........(((((((.......))))))))))..))))))).)))..)))).))............... ( -26.70, z-score = -2.38, R) >droSim1.chr2R 11654380 120 + 19596830 UAAUUGUAAGCACAGAGGCGGUAGUCACCAAAUCAGUGGGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUGCUGGUGACAGCUAAUCUGAGUAAAUGAAGAUAAAGA .........((.((((...(((.(((((((.(((.....((........))........(((((((.......))))))))))..))))))).)))..)))).))............... ( -25.30, z-score = -1.99, R) >consensus UAAUUGUAAGCACAGAGGCGGUAGUCACCAAAUCAGUGUGUAUAAAAAGGCGAUAAAAGGUUUUACAAGAUUAGUAAAAUGGUGCUGGUGACAACUAAUCUGAGUAAAUGAAGAUAAAGA .........((.((((...(((.((((((..........((........))........(((((((.......)))))))......)))))).)))..)))).))............... (-19.12 = -19.12 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:49 2011