| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,918,079 – 12,918,181 |
| Length | 102 |
| Max. P | 0.561004 |
| Location | 12,918,079 – 12,918,181 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 88.54 |
| Shannon entropy | 0.21035 |
| G+C content | 0.45452 |
| Mean single sequence MFE | -31.10 |
| Consensus MFE | -18.64 |
| Energy contribution | -19.03 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12918079 102 - 21146708 CAGGCAUUGAAUAGAACC--AGCGGAUUGCCAGCUCAAUCAUCUAUGA-GAGGUAAUCAAUGCUGAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACG ..(((..((((......(--(((.(((((((..((((........)))-).)))))))...))))......)))).(((((((....)))))))....))).... ( -32.10, z-score = -2.38, R) >droSim1.chr2R 11654199 102 - 19596830 CAGGCAUUGAAUAGAACC--AGCGGAUUGCCAGCUCAAUCAUCUAUGA-GCGGUAAUCAAUGCUGAAUAAUUUCAUGGCGGAACUGUUUCUGCUCUUCGCCAACG ..(((..((((......(--(((.(((((((.(((((........)))-)))))))))...))))......)))).(((((((....)))))))....))).... ( -36.20, z-score = -3.76, R) >droSec1.super_1 10426556 102 - 14215200 CAGGCAUUGAAUAGAACC--AGCGGAUUGCCAGCUCAAUCAUCUAUGA-GCGGUAAUCAAUGCUGAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACG ..(((..((((......(--(((.(((((((.(((((........)))-)))))))))...))))......)))).(((((((....)))))))....))).... ( -36.20, z-score = -3.57, R) >droYak2.chr2R 2589904 102 + 21139217 GAGUCAUUGAAUAGAACC--UGCAGGUUGCCAGCUCAAUCAUCUAUGA-GAGGUAAUCAAUGCUAAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACG .((.((((((....((((--....))))(((..((((........)))-).)))..))))))))...........(((((((...((....))..)))))))... ( -27.50, z-score = -1.54, R) >droEre2.scaffold_4845 9665133 102 + 22589142 CAGGCAGUGAAUAGAACC--UGCAGAUUGCCAGCUCAAUCAUCUAUGG-GAGGUAAUCAAUGCUAAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACG ..(((.(((((.......--.((((((((((..((((........)))-).)))))))..)))........)))))(((((((....)))))))....))).... ( -29.39, z-score = -1.59, R) >droAna3.scaffold_13266 6202216 97 + 19884421 CAUUCAUGGAAUGGAACCCAUGCAGAUUG-----GCAAUCAUCUAUGAGGCGGCAAUCAAAGCCAAAUCAUUUCAUGACGGAACUGUUUCUGCUAUU--CCAAC- ...(((((((((((...((.(((......-----))).(((....))))).(((.......)))...))))))))))).((((..((....))..))--))...- ( -25.20, z-score = -1.34, R) >consensus CAGGCAUUGAAUAGAACC__AGCAGAUUGCCAGCUCAAUCAUCUAUGA_GAGGUAAUCAAUGCUAAAUAAUUUCAUGGCGGAACUGCUUCUGCUCUUCGCCAACG .....................((((((((((...(((........)))...)))))))..)))............(((((((...((....))..)))))))... (-18.64 = -19.03 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:47 2011