| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,917,164 – 12,917,262 |
| Length | 98 |
| Max. P | 0.690505 |
| Location | 12,917,164 – 12,917,262 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 98.98 |
| Shannon entropy | 0.01727 |
| G+C content | 0.45714 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -23.60 |
| Energy contribution | -23.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12917164 98 - 21146708 UCGAAACCGCACAAAAACAACCCCAAGCUUGGGGGAACUAUUGGUAUAAACAAUCAGCAAACACAGUGCGUUUCAGAACUGUGAGACGGCGCAAAGUU ..(((((.((((........(((((....)))))...((((((.......)))).))........))))))))).....((((......))))..... ( -23.90, z-score = -1.06, R) >droSim1.chr2R 11653297 98 - 19596830 UCGAAACCGCACAAAAACAACCCCAAGCUUGGGGGAACUAUUGGUAUAAACAAUCAGCAAACACAGUGCGUUUCAGAACUGUGAGACGGCGCAAAGUU ..(((((.((((........(((((....)))))...((((((.......)))).))........))))))))).....((((......))))..... ( -23.90, z-score = -1.06, R) >droSec1.super_1 10425654 98 - 14215200 UCGAAACCGCACAAAAACAACCCCAAGCUUGGGGGAACUAUUGGUAUAAACAAUCAGCAAACACAGUGCGUUUCAGAACUGUGAGACGGCGCAAAGUU ..(((((.((((........(((((....)))))...((((((.......)))).))........))))))))).....((((......))))..... ( -23.90, z-score = -1.06, R) >droYak2.chr2R 2588992 98 + 21139217 UCGAAACCGCACAAAAACAACCCCAAGCUUGGGGGAACUAUUGGUAUAAACAAUCAGCAAACGCAGUGCGUUUCAGAACUGUGAGACGGCGAAAAGUU (((...((((((........(((((....)))))......................((....)).))))((((((......)))))))))))...... ( -24.70, z-score = -1.25, R) >droEre2.scaffold_4845 9664229 98 + 22589142 UCGAAACCGCACAAAAACAACCCCAAGCUUGGGGGAACUAUUGGUAUAAACAAUCAGCAAACACAGUGCGUUUCAGAACUGUGAGACGGCGAAAAGUU (((...((((((........(((((....)))))...((((((.......)))).))........))))((((((......)))))))))))...... ( -24.60, z-score = -1.58, R) >consensus UCGAAACCGCACAAAAACAACCCCAAGCUUGGGGGAACUAUUGGUAUAAACAAUCAGCAAACACAGUGCGUUUCAGAACUGUGAGACGGCGCAAAGUU ......((((((........(((((....)))))...((((((.......)))).))........))))((((((......))))))))......... (-23.60 = -23.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:47 2011