| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,089,358 – 3,089,465 |
| Length | 107 |
| Max. P | 0.747141 |
| Location | 3,089,358 – 3,089,465 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 85.83 |
| Shannon entropy | 0.23339 |
| G+C content | 0.39363 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -18.08 |
| Energy contribution | -17.88 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3089358 107 - 23011544 GAAGAAGAAGCAUAAGUCUAACGGCAUCCAAAACUAUCUUAGUUAUAGGGUAUGAACAAUCUUAUGUUCUCGACUAAUGCCAAACGAGGCGUUA---CAAUAAUUUCCAC ((((..((((((((((((....)))((((..(((((...)))))...))))..........))))))).))...(((((((......)))))))---......))))... ( -22.00, z-score = -1.70, R) >droEre2.scaffold_4929 3131866 96 - 26641161 -----------GGAAGUCUAACGGCACCAAAAACUAUCUUAGUUAUAGGGUAUGAACCAACUUAUGUUCUUGGCUAAUGCCAAACGAGGCGUUA---CAAUAAUUUCCAC -----------(((((((....))).((((....(((((((....))))))).((((........)))))))).(((((((......)))))))---.......)))).. ( -24.20, z-score = -2.44, R) >droYak2.chr2L 3080590 96 - 22324452 -----------GCAAGUCUAACGGCAUCAGAAACUAUCUUAGUUAUAGGGUAUGAACAGUCUUAUGUUCUUGGCCAAUGCCAAACGAGGCGUUA---CAAUCAUUUCCAC -----------...........(((.........(((((((....))))))).(((((......)))))...)))((((((......)))))).---............. ( -21.20, z-score = -1.24, R) >droSec1.super_5 1241145 110 - 5866729 GAAGAAGUAGCAUAAGUCUAACGGCAUCCGAAACUAUCUUAGUUACAGGGUAUGAACAAUCUUAUGUUCUCGACUAAUGCCAAACGAGGCGUUACAACAAUAAUUUCCAC ......(((((...((((.......((((..(((((...)))))...))))..(((((......)))))..))))...(((......))))))))............... ( -23.30, z-score = -1.62, R) >droSim1.chr2L 3027321 110 - 22036055 GAAGAAGUAGCAUAAGUCUAACGGCAUCCGAAACUAUCUUAGUUACAGGGUAUGAACAAUCUUAUGUUCUCGACUAAUGCCAAACGAGGCGUUACAACAAUAAUUUCCAC ......(((((...((((.......((((..(((((...)))))...))))..(((((......)))))..))))...(((......))))))))............... ( -23.30, z-score = -1.62, R) >consensus GAAGAAG_AGCAUAAGUCUAACGGCAUCCGAAACUAUCUUAGUUAUAGGGUAUGAACAAUCUUAUGUUCUCGACUAAUGCCAAACGAGGCGUUA___CAAUAAUUUCCAC ...............(((....)))......(((((...)))))....(((..(((((......)))))...)))((((((......))))))................. (-18.08 = -17.88 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:01 2011