| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,915,928 – 12,915,995 |
| Length | 67 |
| Max. P | 0.762749 |
| Location | 12,915,928 – 12,915,995 |
|---|---|
| Length | 67 |
| Sequences | 4 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 97.76 |
| Shannon entropy | 0.03633 |
| G+C content | 0.47388 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.25 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.762749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12915928 67 + 21146708 CCAUAGGCAUUGGAAUAUGUAUGGCUUGCGCGUGAGUGUGUGGGUGUGCUGUUCAGUUAUCUGUGUU .(((((..(...(((((.(((((.(((((((....))))).)).))))))))))...)..))))).. ( -21.30, z-score = -1.93, R) >droYak2.chr2R 2587752 67 - 21139217 UCAUAGCCAUUGGAAUAUGUAUGGCUUGCGCGUCAGUGUGUGGGUGUGCUGUUCAGUUAUCUGUGUU .(((((......(((((.(((((.((..((((....))))..))))))))))))......))))).. ( -19.10, z-score = -1.08, R) >droSec1.super_1 10424423 67 + 14215200 CCAUAGCCAUUGGAAUAUGUAUGGCUUGCGCGUGAGUGUGUGGGUGUGCUGUUCAGUUAUCUGUGUU .(((((......(((((.(((((.(((((((....))))).)).))))))))))......))))).. ( -20.00, z-score = -1.33, R) >droSim1.chr2R 11652044 67 + 19596830 CCAUAGCCAUUGGAAUAUGUAUGGCUUGCGCGUGAGUGUGUGGGUGUGCUGUUCAGUUAUCUGUGUU .(((((......(((((.(((((.(((((((....))))).)).))))))))))......))))).. ( -20.00, z-score = -1.33, R) >consensus CCAUAGCCAUUGGAAUAUGUAUGGCUUGCGCGUGAGUGUGUGGGUGUGCUGUUCAGUUAUCUGUGUU .(((((......(((((.(((((.((..((((....))))..))))))))))))......))))).. (-19.25 = -19.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:46 2011