| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,915,135 – 12,915,228 |
| Length | 93 |
| Max. P | 0.799976 |
| Location | 12,915,135 – 12,915,228 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 75.59 |
| Shannon entropy | 0.45599 |
| G+C content | 0.54301 |
| Mean single sequence MFE | -33.87 |
| Consensus MFE | -19.53 |
| Energy contribution | -21.87 |
| Covariance contribution | 2.34 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12915135 93 + 21146708 AUGACGGCAUAUGUGUAUUUAUUUUCCA------CACUCGCCCAUCG-GUGGCAGUGAGUGUUAGUGAGCGACGCGCGUGUGUGAGUGCGUCGAGUGCUG ....((((((.......((((((....(------((((((((((...-.)))..)))))))).))))))((((((((........)))))))).)))))) ( -35.10, z-score = -1.52, R) >droSim1.chr2R 11651248 93 + 19596830 AUGACGGCAUAUGUGUAUUUAUUUUCCA------CACUCGCCCAUCG-GUGGCAGUGAGUGUGAGGGAACGACGCGCGUGUGUGAGUGCGUCGAGUGCUG ....((((((...........((..(((------((((((((((...-.)))..))))))))).)..))((((((((........)))))))).)))))) ( -40.50, z-score = -3.06, R) >droSec1.super_1 10423627 93 + 14215200 AUGACGGCAUAUGUGUAUUUAUUUUCCA------CACUCGCCCAUCG-GUGGCAGUGAGUGUGAGGGAACGACGCGCGUGUGUGAGUGCGUCGAGUGCUG ....((((((...........((..(((------((((((((((...-.)))..))))))))).)..))((((((((........)))))))).)))))) ( -40.50, z-score = -3.06, R) >droYak2.chr2R 2586956 93 - 21139217 AUGACGGCAUAUGUGUAUUUAUUUUCCA------CACUCGCCCAUCG-GUGCAAGGGAGUGUGAGUGAGCGGCGCGCGUGUGUUUGUGCGUCGAGUGCUG ....((((((..((.(((((((.((((.------....((((....)-)))....)))).))))))).))((((((((......))))))))..)))))) ( -34.10, z-score = -0.94, R) >droEre2.scaffold_4845 9662238 93 - 22589142 AUGACGGCAUAUGUGUAUUUAUUUUCCA------CACUCGCCCAUCG-CUGUAAGUGAGUGUGAGUGAGCGGCGCGCGUGUGUGUGUGCGUCGAGUGCUG ....((((((..................------(((((((...(((-(.....))))..)))))))..(((((((((......))))))))).)))))) ( -35.40, z-score = -1.58, R) >droAna3.scaffold_13266 6199461 93 - 19884421 AUAACAACAAAAUCGGAGUGAACCCCAAGGCGUCCAGUUGUUUAUUGUGUGGUAAUUAGUCUGAUCGCCGUCCGCCCGCCACCGCCACCGCCA------- .............(((.(((.((.....((((..((((((.(((((....))))).))).)))..)))))).))))))...............------- ( -17.60, z-score = 1.06, R) >consensus AUGACGGCAUAUGUGUAUUUAUUUUCCA______CACUCGCCCAUCG_GUGGCAGUGAGUGUGAGUGAGCGACGCGCGUGUGUGAGUGCGUCGAGUGCUG ....((((((........................((((((((((.....)))..)))))))........((((((((........)))))))).)))))) (-19.53 = -21.87 + 2.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:45 2011