| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,914,647 – 12,914,755 |
| Length | 108 |
| Max. P | 0.531165 |
| Location | 12,914,647 – 12,914,755 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.01 |
| Shannon entropy | 0.26514 |
| G+C content | 0.41687 |
| Mean single sequence MFE | -30.04 |
| Consensus MFE | -23.84 |
| Energy contribution | -23.68 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.531165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12914647 108 - 21146708 CUUUUCUUUUCAGCUUGAAAAUUGGAAUGAAAUGACGAGAAAGAGCGCAUAUCUGCCAGUGUUGAAAAGGGCUUUAGUUCGGUACGGAAUUCAGUACCUAAAACUGGU----------- ...(((((((((((......(((((...((.(((.((........))))).))..))))))))))))))))..((((((.(((((........)))))...)))))).----------- ( -27.40, z-score = -1.24, R) >droEre2.scaffold_4845 9661720 119 + 22589142 CUUUUCUUUUCAGCUUGAAAAUUGGAAUGAAAUGACGAGAAAGAGCGCAUAUCUGCCAGUGUUGAAUAGGGCGGCGGUUAGGUACGGAAUUCAGUGCUCGUACCGUACCUACGAUUGGU ((..((..((((((......(((((...((.(((.((........))))).))..)))))))))))((((...(((((..(((((........)))))...))))).)))).))..)). ( -31.20, z-score = -0.30, R) >droYak2.chr2R 2586436 119 + 21139217 CUUUUCUUUUCAGCUUGAAAAUUGGAAUGAAAUGACGAGAAAGAGCGCAUAUCUGCCAGUGUUGAAAAGGGCGGCGGUUAGGUACGGAAUUAAGUGCCCGUACCGUACCUGAAAUUGGU ...(((((((((((......(((((...((.(((.((........))))).))..))))))))))))))))..(((((..(((((........)))))...)))))(((.......))) ( -33.80, z-score = -1.52, R) >droSec1.super_1 10423119 108 - 14215200 CUUUUCUUUUCAGCUUGAAAAUUGGAAUGAAAUGACGAGAAAGAGCGCAUAACUGCCAGUGUUGAAAAGAGCUUCAGUUCGGUACGAACUUCAGUACCUAAAACUGGU----------- ...(((((((((((......(((((...(..(((.((........)))))..)..))))))))))))))))..((((((.(((((........)))))...)))))).----------- ( -27.70, z-score = -1.43, R) >droSim1.chr2R 11650748 108 - 19596830 CUUUUCUUUUCAGCUUGAAAAUUGGAAUGAAAUGACGAGAAAGAGCGCAUAUCUGCCAGUGUUGAAAAGGUCUUCAGUUUGGUACGGAAUUCAGUACCUAAAACUGGU----------- ....((((((((((......(((((...((.(((.((........))))).))..)))))))))))))))...((((((((((((........)))))..))))))).----------- ( -30.10, z-score = -2.18, R) >consensus CUUUUCUUUUCAGCUUGAAAAUUGGAAUGAAAUGACGAGAAAGAGCGCAUAUCUGCCAGUGUUGAAAAGGGCUUCAGUUAGGUACGGAAUUCAGUACCUAAAACUGGU___________ ....((((((((((......(((((...((.(((.((........))))).))..)))))))))))))))..........(((((........)))))..................... (-23.84 = -23.68 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:44 2011