| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,908,240 – 12,908,291 |
| Length | 51 |
| Max. P | 0.746741 |
| Location | 12,908,240 – 12,908,291 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 72.15 |
| Shannon entropy | 0.48809 |
| G+C content | 0.52562 |
| Mean single sequence MFE | -14.92 |
| Consensus MFE | -11.46 |
| Energy contribution | -12.02 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12908240 51 + 21146708 ---CUACGGUGCAUUCAAAUAAAGUGGGCCAA----GCUUGGCGCCAAAA-AUUCCGCC ---....(((.((((.......)))).)))..----....((((......-....)))) ( -10.50, z-score = 0.41, R) >droAna3.scaffold_13266 6193113 54 - 19884421 -----GCGGUGCCUUGCUUCUAAGUGGGUCAAGACCGCUUGGCGCCGAAAAUGCGCGAU -----.(((((((........((((((.......)))))))))))))............ ( -19.10, z-score = -0.81, R) >droEre2.scaffold_4845 9653743 52 - 22589142 ------UGGUUCGUUCAAAUAAAGUGGGUCAAGACCGCUUGGCGCCAAGAAAAUC-GCC ------.(((...(((........(((((((((....)))))).))).)))....-))) ( -10.80, z-score = -0.09, R) >droSec1.super_1 10417059 58 + 14215200 CUACGGUGGUGCAUUCAAAUAAAGUGGGUCAAAGCCGCUUGGCGCCAAGA-UUUCCGUC ..((((((((((.........((((((.......)))))).))))))...-...)))). ( -17.20, z-score = -1.55, R) >droSim1.chr2R 11644682 59 + 19596830 CUACGGUGGUGCAUUCAAAUAAAGUGGGUCAAAGCCGCUUGGCGCCAAGAAUUUCCGUC ..((((((((((.........((((((.......)))))).)))))).......)))). ( -17.01, z-score = -1.52, R) >consensus ___C_GUGGUGCAUUCAAAUAAAGUGGGUCAAAACCGCUUGGCGCCAAGAAUUUCCGCC ......((((((.........((((((.......)))))).))))))............ (-11.46 = -12.02 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:42 2011