| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,882,773 – 12,882,871 |
| Length | 98 |
| Max. P | 0.805197 |
| Location | 12,882,773 – 12,882,871 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.92 |
| Shannon entropy | 0.42582 |
| G+C content | 0.50141 |
| Mean single sequence MFE | -34.16 |
| Consensus MFE | -14.87 |
| Energy contribution | -15.29 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12882773 98 - 21146708 ---------AUUAACUGGAUGCAUCACCAC---CCUCCAGCUUGACAUUGUCACGUUCAGGUGGCGGAUGCAUUUGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGU ---------....((((.(((((...((((---(....(((.((((...)))).)))..))))).(((((((..(((....)))..)))))))...)))))))))..... ( -33.30, z-score = -2.17, R) >droSim1.chr2R 11619705 95 - 19596830 ---------AUUAACUGGAUGCAUCACCACCCUCCUCCAGCUUGACAUUGUCACGUUCAGGUGGCGGA------UGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGU ---------.(((((((((................))))).))))....(((((...(((((((((((------(((....))))))))...)))))).....))))).. ( -30.89, z-score = -1.92, R) >droSec1.super_1 10391141 98 - 14215200 ---------UUUAACUGGAUACGUCACCAC---CCUCCAGCUUGACAUUGUCACGUUCAGGUGGCGGAUGCAUUUGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGU ---------.(((((((((...((....))---..))))).))))....(((((...(((((((((((((((........)))))))))...)))))).....))))).. ( -32.60, z-score = -2.43, R) >droYak2.chr2R 2554252 92 + 21139217 ---------AUUAACUGGAUGCAUCACCAC---CCUCCGGCUUGACAUUGUCACGUUCAGGUGGCGGA------UGCAUUUUCAUUUGCAUUCACCUGCAUUGGUGGCAA ---------.......(((((((((.((((---(....(((.((((...)))).)))..)))))..))------)))))))....((((...((((......)))))))) ( -29.40, z-score = -1.55, R) >droEre2.scaffold_4845 9627632 92 + 22589142 ---------AUUAACUGCAUACAACGCCAC---CCUACAGCUUGACAUUGUCACGUUCAGGUGGCGGA------UGCAUUUACAUUCGCAUUCACCUGCAGUAGUGGCAU ---------....((((((......(((((---(....(((.((((...)))).)))..))))))(((------(((..........))))))...))))))........ ( -30.00, z-score = -2.90, R) >droAna3.scaffold_13266 6168241 109 + 19884421 CGGAUGCAUUCGAACAGCAGGUGGCAUCUCCCUUCCGUAGCCUGACACUGUCGUGUCCUGG-GGCGGCGGCGGCGGGAGAUGCAUUAGCUUUUACCUGUAUUAGGUGCGU ...((((((..((...((((((((((((((((..((((.(((((((((....)))))...)-)))....)))).))))))))).........))))))).))..)))))) ( -48.80, z-score = -2.64, R) >consensus _________AUUAACUGGAUGCAUCACCAC___CCUCCAGCUUGACAUUGUCACGUUCAGGUGGCGGA______UGCAUUUGCAUUUGCAUUCACCUGCAUUAGUGGCGU ..............(((((................)))))........((((((...(((((((..........((((........)))).))))))).....)))))). (-14.87 = -15.29 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:41 2011