| Sequence ID | dm3.chr2R |
|---|---|
| Location | 12,875,981 – 12,876,077 |
| Length | 96 |
| Max. P | 0.505171 |
| Location | 12,875,981 – 12,876,077 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 61.91 |
| Shannon entropy | 0.68405 |
| G+C content | 0.39453 |
| Mean single sequence MFE | -21.57 |
| Consensus MFE | -8.10 |
| Energy contribution | -8.27 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 12875981 96 + 21146708 -------------AAUGUGUAUAGUGUGCGGAAAGA----AAGCUCGACUGUACAUAAAUAAUACUACUAACUAAGGGCAGGCGGAAAUAAAUGUUGGACCUGCAGCCUUGAA -------------..(((((((((((.((.......----..)).).))))))))))...............(((((((((((.((........)).).)))))..))))).. ( -25.50, z-score = -2.24, R) >droSim1.chr2R 11613062 85 + 19596830 --------------------AGUGUGUGUAGAAAGA----AAGA----CUCUACAUAAAUAAUACUACUAAAUAAGGGCAGGCGGAAAUAAAUGUUGGACCUGCAGCCUUGAA --------------------((((((((((((....----....----.))))))).....)))))......(((((((((((.((........)).).)))))..))))).. ( -20.10, z-score = -2.02, R) >droSec1.super_1 10384500 96 + 14215200 -------------AGUGUGUUUAAUGUGUAGAAAGA----AAGAUCCACUCUACAUAAAUAAUACUACUAAAUAAGGGCAGGCGGAAAUAAAUGUUGGACCUGCAGCCUUGAA -------------((((((((...((((((((..((----....))...))))))))...))))).)))...(((((((((((.((........)).).)))))..))))).. ( -24.80, z-score = -2.55, R) >droYak2.chr2R 2547468 113 - 21139217 AAUGUGCUUGCGAAGCUAGAGUACCAUGGAUCAGUUCAGACAAUUCCACUGUACAUAAGUAAUGCUACUUAAUAAGGGCAGGCGGAAAUAAAUGUUGGACCUGCAGCCUUGAA .....(((.....)))....((((..((((...((....))...))))..)))).((((((....)))))).(((((((((((.((........)).).)))))..))))).. ( -26.00, z-score = 0.33, R) >droEre2.scaffold_4845 9620958 99 - 22589142 -------------AAUGUGCAU-GCGAGGAAAGAGCUUACAAAGACCACUGUACAUAAAUAAUACUACUUAAGAAGGGCAGGCGGAAAUAAAUGUUGGACCUGCAGCCUUGAA -------------.((((((((-(..((.......))..))........))))))).................((((((((((.((........)).).)))))..))))... ( -18.00, z-score = 0.36, R) >droAna3.scaffold_13266 6161858 84 - 19884421 ------------------GAUUGAUAUGUAAGGGGU----AAUAUUCAUUUUCCAUC-----CCGCAAUCAAUAAGUGCUUAAAAGGUAAUAGGUUAGCGGUGUGUCUUCG-- ------------------((..(((((....((((.----..........))))...-----((((((((......((((.....))))...)))).)))).))))).)).-- ( -15.00, z-score = -0.16, R) >consensus _____________A_UGUGAAUAGUGUGUAGAAAGA____AAGAUCCACUGUACAUAAAUAAUACUACUAAAUAAGGGCAGGCGGAAAUAAAUGUUGGACCUGCAGCCUUGAA ........................................................................(((((((((((.((........)).).)))))..))))).. ( -8.10 = -8.27 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:28:40 2011